diff --git a/Framework/API/inc/MantidAPI/IFunction1D.h b/Framework/API/inc/MantidAPI/IFunction1D.h index 61f9ea1d1b7bc85ad7f934af6978782dfa420740..be43c377419001ec235f83712783ea8482b89cdd 100644 --- a/Framework/API/inc/MantidAPI/IFunction1D.h +++ b/Framework/API/inc/MantidAPI/IFunction1D.h @@ -12,9 +12,11 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms +{ class Fit; } - +} namespace API { //---------------------------------------------------------------------- @@ -88,7 +90,7 @@ protected: static Kernel::Logger g_log; /// Making a friend - friend class CurveFitting::Fit; + friend class CurveFitting::Algorithms::Fit; }; typedef boost::shared_ptr<IFunction1D> IFunction1D_sptr; diff --git a/Framework/CurveFitting/CMakeLists.txt b/Framework/CurveFitting/CMakeLists.txt index 65770666d1efc315f6585a940a8d1979a6693d29..dfbff31c86c754d00670840aa2275393a8de0276 100644 --- a/Framework/CurveFitting/CMakeLists.txt +++ b/Framework/CurveFitting/CMakeLists.txt @@ -3,23 +3,33 @@ set ( SRC_FILES # src/SCDPanelErrors.cpp # src/ChebyshevPolynomialBackground.cpp #src/RefinePowderInstrumentParameters.cpp + src/Algorithms/CalculateChiSquared.cpp + src/Algorithms/CalculateGammaBackground.cpp + src/Algorithms/CalculateMSVesuvio.cpp + src/Algorithms/ConvertToYSpace.cpp + src/Algorithms/ConvolveWorkspaces.cpp + src/Algorithms/EstimatePeakErrors.cpp + src/Algorithms/EvaluateFunction.cpp + src/Algorithms/Fit.cpp + src/Algorithms/Fit1D.cpp + src/Algorithms/FitPowderDiffPeaks.cpp + src/Algorithms/LeBailFit.cpp + src/Algorithms/LeBailFunction.cpp + src/Algorithms/NormaliseByPeakArea.cpp + src/Algorithms/PawleyFit.cpp + src/Algorithms/PlotPeakByLogValue.cpp + src/Algorithms/RefinePowderInstrumentParameters.cpp + src/Algorithms/RefinePowderInstrumentParameters3.cpp + src/Algorithms/SplineBackground.cpp + src/Algorithms/SplineInterpolation.cpp + src/Algorithms/SplineSmoothing.cpp src/AugmentedLagrangianOptimizer.cpp - src/CalculateChiSquared.cpp - src/CalculateGammaBackground.cpp - src/CalculateMSVesuvio.cpp src/Constraints/BoundaryConstraint.cpp - src/ConvertToYSpace.cpp - src/ConvolveWorkspaces.cpp src/CostFunctions/CostFuncFitting.cpp src/CostFunctions/CostFuncLeastSquares.cpp src/CostFunctions/CostFuncRwp.cpp src/CostFunctions/CostFuncUnweightedLeastSquares.cpp - src/EstimatePeakErrors.cpp - src/EvaluateFunction.cpp - src/Fit.cpp - src/Fit1D.cpp src/FitMW.cpp - src/FitPowderDiffPeaks.cpp src/FuncMinimizers/BFGS_Minimizer.cpp src/FuncMinimizers/DampingMinimizer.cpp src/FuncMinimizers/DerivMinimizer.cpp @@ -99,22 +109,13 @@ set ( SRC_FILES src/IFittingAlgorithm.cpp src/LatticeDomainCreator.cpp src/LatticeFunction.cpp - src/LeBailFit.cpp - src/LeBailFunction.cpp src/MSVesuvioHelpers.cpp src/MultiDomainCreator.cpp - src/NormaliseByPeakArea.cpp src/ParDomain.cpp src/ParameterEstimator.cpp - src/PawleyFit.cpp - src/PlotPeakByLogValue.cpp - src/RefinePowderInstrumentParameters3.cpp src/SeqDomain.cpp src/SeqDomainSpectrumCreator.cpp src/SpecialFunctionHelper.cpp - src/SplineBackground.cpp - src/SplineInterpolation.cpp - src/SplineSmoothing.cpp ) set ( SRC_UNITY_IGNORE_FILES src/Fit1D.cpp src/GSLFunctions.cpp ) @@ -124,24 +125,34 @@ set ( INC_FILES # inc/MantidCurveFitting/SCDPanelErrors.h # inc/MantidCurveFitting/ChebyshevPolynomialBackground.h #inc/MantidCurveFitting/RefinePowderInstrumentParameters.h + inc/MantidCurveFitting/Algorithms/CalculateChiSquared.h + inc/MantidCurveFitting/Algorithms/CalculateGammaBackground.h + inc/MantidCurveFitting/Algorithms/CalculateMSVesuvio.h + inc/MantidCurveFitting/Algorithms/ConvertToYSpace.h + inc/MantidCurveFitting/Algorithms/ConvolveWorkspaces.h + inc/MantidCurveFitting/Algorithms/EstimatePeakErrors.h + inc/MantidCurveFitting/Algorithms/EvaluateFunction.h + inc/MantidCurveFitting/Algorithms/Fit.h + inc/MantidCurveFitting/Algorithms/Fit1D.h + inc/MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h + inc/MantidCurveFitting/Algorithms/LeBailFit.h + inc/MantidCurveFitting/Algorithms/LeBailFunction.h + inc/MantidCurveFitting/Algorithms/NormaliseByPeakArea.h + inc/MantidCurveFitting/Algorithms/PawleyFit.h + inc/MantidCurveFitting/Algorithms/PlotPeakByLogValue.h + inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h + inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h + inc/MantidCurveFitting/Algorithms/SplineBackground.h + inc/MantidCurveFitting/Algorithms/SplineInterpolation.h + inc/MantidCurveFitting/Algorithms/SplineSmoothing.h inc/MantidCurveFitting/AugmentedLagrangianOptimizer.h - inc/MantidCurveFitting/CalculateChiSquared.h - inc/MantidCurveFitting/CalculateGammaBackground.h - inc/MantidCurveFitting/CalculateMSVesuvio.h inc/MantidCurveFitting/Constraints/BoundaryConstraint.h - inc/MantidCurveFitting/ConvertToYSpace.h - inc/MantidCurveFitting/ConvolveWorkspaces.h inc/MantidCurveFitting/CostFunctions/CostFuncFitting.h inc/MantidCurveFitting/CostFunctions/CostFuncLeastSquares.h inc/MantidCurveFitting/CostFunctions/CostFuncRwp.h inc/MantidCurveFitting/CostFunctions/CostFuncUnweightedLeastSquares.h inc/MantidCurveFitting/DllConfig.h - inc/MantidCurveFitting/EstimatePeakErrors.h - inc/MantidCurveFitting/EvaluateFunction.h - inc/MantidCurveFitting/Fit.h - inc/MantidCurveFitting/Fit1D.h inc/MantidCurveFitting/FitMW.h - inc/MantidCurveFitting/FitPowderDiffPeaks.h inc/MantidCurveFitting/FuncMinimizers/BFGS_Minimizer.h inc/MantidCurveFitting/FuncMinimizers/DampingMinimizer.h inc/MantidCurveFitting/FuncMinimizers/DerivMinimizer.h @@ -224,43 +235,45 @@ set ( INC_FILES inc/MantidCurveFitting/Jacobian.h inc/MantidCurveFitting/LatticeDomainCreator.h inc/MantidCurveFitting/LatticeFunction.h - inc/MantidCurveFitting/LeBailFit.h - inc/MantidCurveFitting/LeBailFunction.h inc/MantidCurveFitting/MSVesuvioHelpers.h inc/MantidCurveFitting/MultiDomainCreator.h - inc/MantidCurveFitting/NormaliseByPeakArea.h inc/MantidCurveFitting/ParDomain.h inc/MantidCurveFitting/ParameterEstimator.h - inc/MantidCurveFitting/PawleyFit.h - inc/MantidCurveFitting/PlotPeakByLogValue.h - inc/MantidCurveFitting/RefinePowderInstrumentParameters3.h inc/MantidCurveFitting/SeqDomain.h inc/MantidCurveFitting/SeqDomainSpectrumCreator.h inc/MantidCurveFitting/SpecialFunctionSupport.h - inc/MantidCurveFitting/SplineBackground.h - inc/MantidCurveFitting/SplineInterpolation.h - inc/MantidCurveFitting/SplineSmoothing.h ) set ( TEST_FILES # ChebyshevPolynomialBackgroundTest.h # RefinePowderInstrumentParametersTest.h #SCDPanelErrorsTest.h + Algorithms/CalculateChiSquaredTest.h + Algorithms/CalculateGammaBackgroundTest.h + Algorithms/CalculateMSVesuvioTest.h + Algorithms/ConvertToYSpaceTest.h + Algorithms/ConvolveWorkspacesTest.h + Algorithms/EstimatePeakErrorsTest.h + Algorithms/EvaluateFunctionTest.h + Algorithms/FitPowderDiffPeaksTest.h + Algorithms/FitTest.h + Algorithms/LeBailFitTest.h + Algorithms/LeBailFunctionTest.h + Algorithms/NormaliseByPeakAreaTest.h + Algorithms/PawleyFitTest.h + Algorithms/PlotPeakByLogValueTest.h + Algorithms/RefinePowderInstrumentParameters3Test.h + Algorithms/RefinePowderInstrumentParametersTest.h + Algorithms/SeqDomainSpectrumCreatorTest.h + Algorithms/SplineBackgroundTest.h + Algorithms/SplineInterpolationTest.h + Algorithms/SplineSmoothingTest.h AugmentedLagrangianOptimizerTest.h - Constraints/BoundaryConstraintTest.h - CalculateChiSquaredTest.h - CalculateGammaBackgroundTest.h - CalculateMSVesuvioTest.h CompositeFunctionTest.h - ConvertToYSpaceTest.h - ConvolveWorkspacesTest.h + Constraints/BoundaryConstraintTest.h CostFunctions/CostFuncUnweightedLeastSquaresTest.h CostFunctions/LeastSquaresTest.h - EstimatePeakErrorsTest.h - EvaluateFunctionTest.h FitMWTest.h - FitPowderDiffPeaksTest.h - FitTest.h FuncMinimizers/BFGSTest.h FuncMinimizers/DampingMinimizerTest.h FuncMinimizers/FABADAMinimizerTest.h @@ -339,20 +352,10 @@ set ( TEST_FILES IPeakFunctionIntensityTest.h LatticeDomainCreatorTest.h LatticeFunctionTest.h - LeBailFitTest.h - LeBailFunctionTest.h MultiDomainCreatorTest.h MultiDomainFunctionTest.h - NormaliseByPeakAreaTest.h ParameterEstimatorTest.h - PawleyFitTest.h - PlotPeakByLogValueTest.h - RefinePowderInstrumentParameters3Test.h - SeqDomainSpectrumCreatorTest.h SpecialFunctionSupportTest.h - SplineBackgroundTest.h - SplineInterpolationTest.h - SplineSmoothingTest.h ) if (COVERALLS) diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateChiSquared.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateChiSquared.h similarity index 97% rename from Framework/CurveFitting/inc/MantidCurveFitting/CalculateChiSquared.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateChiSquared.h index 34d50d67839be92218d2d149aad8272f7c9ce575..867ec832b324d9ad2353e516c3235fc791d48ed4 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateChiSquared.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateChiSquared.h @@ -6,6 +6,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** @@ -51,6 +52,7 @@ private: std::vector<size_t> m_fixedParameters; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateGammaBackground.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateGammaBackground.h similarity index 95% rename from Framework/CurveFitting/inc/MantidCurveFitting/CalculateGammaBackground.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateGammaBackground.h index a7c97b9d8c0e2df881662d1519b7ed79b926887b..74a42ea1fe69c698cad413ad1fee1b92aac17136 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateGammaBackground.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateGammaBackground.h @@ -7,13 +7,15 @@ namespace Mantid { namespace CurveFitting { +namespace Functions { +struct ResolutionParams; +} +namespace Algorithms { //--------------------------------------------------------------------------- // Forward declarations //--------------------------------------------------------------------------- struct DetectorParams; -namespace Functions { -struct ResolutionParams; -} + /** @@ -82,12 +84,12 @@ private: const FoilInfo &foilInfo, const Kernel::V3D &detPos, const DetectorParams &detPar, - const Functions::ResolutionParams &detRes); + const CurveFitting::Functions::ResolutionParams &detRes); /// Compute a TOF spectrum for the given inputs & spectrum void calculateTofSpectrum(std::vector<double> &result, std::vector<double> &tmpWork, const size_t wsIndex, const DetectorParams &detpar, - const Functions::ResolutionParams &respar); + const CurveFitting::Functions::ResolutionParams &respar); /// Check and store appropriate input data void retrieveInputs(); @@ -135,6 +137,7 @@ private: API::Progress *m_progress; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateMSVesuvio.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateMSVesuvio.h similarity index 97% rename from Framework/CurveFitting/inc/MantidCurveFitting/CalculateMSVesuvio.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateMSVesuvio.h index 49691f5f00dd132911356d618afe40da92ca5577..70bc7eced890f2f1750c21056843afc4903f3ee6 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/CalculateMSVesuvio.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/CalculateMSVesuvio.h @@ -9,15 +9,18 @@ namespace Mantid { namespace CurveFitting { -struct DetectorParams; -namespace Functions{ -struct ResolutionParams; -} namespace MSVesuvioHelper { class RandomNumberGenerator; struct Simulation; struct SimulationWithErrors; } +namespace Functions{ +struct ResolutionParams; +} +namespace Algorithms { +struct DetectorParams; + + /** Calculates the multiple scattering & total scattering contributions @@ -115,7 +118,7 @@ private: const double e1res) const; // Member Variables - MSVesuvioHelper::RandomNumberGenerator *m_randgen; // random number generator + CurveFitting::MSVesuvioHelper::RandomNumberGenerator *m_randgen; // random number generator size_t m_acrossIdx, m_upIdx, m_beamIdx; // indices of each direction Kernel::V3D m_beamDir; // Directional vector for beam @@ -135,6 +138,7 @@ private: API::MatrixWorkspace_sptr m_inputWS; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/ConvertToYSpace.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvertToYSpace.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/ConvertToYSpace.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvertToYSpace.h index c548e60ad362f48487a0dfdb134dc85c73cfccdd..6ed4648408a367518609fab46670ec8d4c4dbe18 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/ConvertToYSpace.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvertToYSpace.h @@ -5,6 +5,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /// Simple data structure to store nominal detector values /// It avoids some functions taking a huge number of arguments @@ -101,6 +102,7 @@ private: API::MatrixWorkspace_sptr m_qOutputWS; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/ConvolveWorkspaces.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvolveWorkspaces.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/ConvolveWorkspaces.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvolveWorkspaces.h index 6ddf94ef02f09d5fe9d03eb6e3e5634aeaaaac83..19fa08127b0e1a54c8fdd6a0a6594e1faba251ec 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/ConvolveWorkspaces.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/ConvolveWorkspaces.h @@ -15,6 +15,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** Convolution of two workspaces Copyright © 2012 ISIS Rutherford Appleton Laboratory, NScD Oak Ridge @@ -65,6 +66,7 @@ private: API::Progress *prog; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/EstimatePeakErrors.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EstimatePeakErrors.h similarity index 96% rename from Framework/CurveFitting/inc/MantidCurveFitting/EstimatePeakErrors.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EstimatePeakErrors.h index fa886873c50b189aa5aab1cb5bc594f5b5a98c5b..c16a6b037959f973eed6c93204d73d11ed92ac45 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/EstimatePeakErrors.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EstimatePeakErrors.h @@ -5,6 +5,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { //--------------------------------------------------------------------------- /** @@ -44,6 +45,7 @@ private: void exec(); }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/EvaluateFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EvaluateFunction.h similarity index 97% rename from Framework/CurveFitting/inc/MantidCurveFitting/EvaluateFunction.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EvaluateFunction.h index 48bfd7abe57983d68d45b5c817c6361fb06313fa..55be4b63901ced996a404c85b2980f8702f52d29 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/EvaluateFunction.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/EvaluateFunction.h @@ -6,6 +6,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** @@ -44,6 +45,7 @@ private: void execConcrete(); }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Fit.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/Fit.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit.h index baaf264d06d012cfa0efda8169d7ae9181d28c68..20c76810d8a5affe143d42be189d9fd0b77ca9d6 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Fit.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit.h @@ -20,6 +20,7 @@ class IFuncMinimizer; } namespace CurveFitting { +namespace Algorithms { /** A generic fitting algorithm. It fits a function to some data in a workspace. @@ -114,6 +115,7 @@ protected: void copyMinimizerOutput(const API::IFuncMinimizer &minimizer); }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Fit1D.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit1D.h similarity index 99% rename from Framework/CurveFitting/inc/MantidCurveFitting/Fit1D.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit1D.h index 132ce49ede9e9ea965ca0537a32b2925355d4b0c..9cfc546a20c3023fc0d609560b8d3eece550cf72 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Fit1D.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/Fit1D.h @@ -10,6 +10,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** Deprecation notice: instead of using this algorithm please use the Fit algorithm instead. @@ -140,6 +141,7 @@ protected: friend struct FitData; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/FitPowderDiffPeaks.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h similarity index 99% rename from Framework/CurveFitting/inc/MantidCurveFitting/FitPowderDiffPeaks.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h index 99b67e7fa3fdf861b7d18c98803991608cb52308..452946ce661313484e357f363ce5f3b4f6a90e87 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/FitPowderDiffPeaks.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h @@ -15,6 +15,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** FitPowderDiffPeaks : Fit peaks in powder diffraction pattern. @@ -434,6 +435,7 @@ size_t findMaxValue(API::MatrixWorkspace_sptr dataws, size_t wsindex, /// Get function parameter name, value and etc information in string std::string getFunctionInfo(API::IFunction_sptr function); +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFit.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFit.h similarity index 99% rename from Framework/CurveFitting/inc/MantidCurveFitting/LeBailFit.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFit.h index ac2377fab9b64fdb09f5c07b74f7ff75a993adfd..852642ba42cb98880ad875c823bb965abf46a333 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFit.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFit.h @@ -3,7 +3,7 @@ #include "MantidKernel/System.h" #include "MantidAPI/Algorithm.h" -#include "MantidCurveFitting/LeBailFunction.h" +#include "MantidCurveFitting/Algorithms/LeBailFunction.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidAPI/MatrixWorkspace_fwd.h" @@ -16,6 +16,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** LeBailFit : Algorithm to do Le Bail Fit. The workflow and architecture of this algorithm is different from LeBailFit, @@ -474,6 +475,7 @@ void convertTableWorkspaceToMaps( std::vector<std::map<std::string, std::string>> strmaps, std::vector<std::map<std::string, double>> dblmaps); +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFunction.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFunction.h similarity index 97% rename from Framework/CurveFitting/inc/MantidCurveFitting/LeBailFunction.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFunction.h index 5133b660fb0a925a0e9952d544b8953ae50c0adf..081e9f5e84483f6bfb3556019af5d7f517e6d5f4 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/LeBailFunction.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/LeBailFunction.h @@ -9,10 +9,13 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** LeBailFunction : LeBailFunction is to calculate peak intensities in a composite * function including neutron peak and background functions. + * Note: This is not a Mantid Fit Function, just a helper + * class to the algorithm @date 2013-04-26 : original LeBailFunction is not used by any other functions. And thus @@ -212,6 +215,7 @@ private: typedef boost::shared_ptr<LeBailFunction> LeBailFunction_sptr; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/NormaliseByPeakArea.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/NormaliseByPeakArea.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/NormaliseByPeakArea.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/NormaliseByPeakArea.h index 56ae1b98d345e495576ea53cf04931ecaebae29d..4cfac079922ccc7d1b7579199dad4aae0f9fc293 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/NormaliseByPeakArea.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/NormaliseByPeakArea.h @@ -6,6 +6,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** @@ -87,6 +88,7 @@ private: API::Progress *m_progress; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/PawleyFit.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PawleyFit.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/PawleyFit.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PawleyFit.h index e7a45729d8721215c81e00e58a93d9068956b721..6b83f391c2a35e71c3c0e0e82922e7e09329d8af 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/PawleyFit.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PawleyFit.h @@ -10,6 +10,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** @class V3DFromHKLColumnExtractor @@ -95,6 +96,7 @@ protected: Kernel::Unit_sptr m_dUnit; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/PlotPeakByLogValue.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PlotPeakByLogValue.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/PlotPeakByLogValue.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PlotPeakByLogValue.h index 891f455c6e78482bd644cc1a74e8a563730eded7..0c0acc74d34543a09c5202729c92f1c91aebdfaf 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/PlotPeakByLogValue.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/PlotPeakByLogValue.h @@ -9,6 +9,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** Takes a workspace group and fits the same spectrum in all workspaces with @@ -119,6 +120,7 @@ private: std::map<std::string, std::vector<std::string>> m_minimizerWorkspaces; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h similarity index 94% rename from Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h index debe7054a8bbfc3ff26d11c0638cd687034fec87..ae51ee6bc546147d19ee3d365b728512e0bf0641 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h @@ -8,15 +8,16 @@ #include "MantidAPI/ITableWorkspace_fwd.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidDataObjects/Workspace2D.h" -#include "MantidCurveFitting/BackgroundFunction.h" -#include "MantidCurveFitting/Polynomial.h" -#include "MantidCurveFitting/BackToBackExponential.h" -#include "MantidCurveFitting/ThermalNeutronDtoTOFFunction.h" +#include "MantidCurveFitting/Functions/BackgroundFunction.h" +#include "MantidCurveFitting/Functions/Polynomial.h" +#include "MantidCurveFitting/Functions/BackToBackExponential.h" +#include "MantidCurveFitting/Functions/ThermalNeutronDtoTOFFunction.h" #include "MantidAPI/FunctionDomain.h" #include "MantidAPI/FunctionValues.h" namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** RefinePowderInstrumentParameters : Algorithm to refine instrument geometry parameters only. @@ -154,7 +155,7 @@ private: DataObjects::Workspace2D_sptr dataWS; /// Map for all peaks to fit individually - std::map<std::vector<int>, CurveFitting::BackToBackExponential_sptr> mPeaks; + std::map<std::vector<int>, Functions::BackToBackExponential_sptr> mPeaks; /// Map for all peaks' error (fitted vs. experimental): [HKL]: Chi^2 std::map<std::vector<int>, double> mPeakErrors; @@ -187,7 +188,7 @@ private: size_t mMaxNumberStoredParameters; /// Modelling function - CurveFitting::ThermalNeutronDtoTOFFunction_sptr mFunction; + Functions::ThermalNeutronDtoTOFFunction_sptr mFunction; }; /** Formular for linear iterpolation: X = [(xf-x0)*Y - (xf*y0-x0*yf)]/(yf-y0) @@ -206,6 +207,7 @@ inline double linearInterpolateY(double x0, double xf, double y0, double yf, return y; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters3.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters3.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h index 46cbed993a578cf530235ec39e26daff51c12d6b..56875c6c88568c1c49d67c13d29018a34627fb3b 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/RefinePowderInstrumentParameters3.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h @@ -8,12 +8,13 @@ #include "MantidDataObjects/Workspace2D.h" #include "MantidDataObjects/TableWorkspace.h" -#include "MantidCurveFitting/LeBailFit.h" +#include "MantidCurveFitting/Algorithms/LeBailFit.h" #include "MantidCurveFitting/Functions/ThermalNeutronDtoTOFFunction.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** RefinePowderInstrumentParameters3 : @@ -226,6 +227,7 @@ double calculateFunctionChiSquare(const std::vector<double> &modelY, const std::vector<double> &dataY, const std::vector<double> &dataE); +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/SplineBackground.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineBackground.h similarity index 97% rename from Framework/CurveFitting/inc/MantidCurveFitting/SplineBackground.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineBackground.h index 53d877e613b3670c049e7683fa8f5c8c83114ca1..9aa91c96228c809036a56bac61cf5da9e9e01a36 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/SplineBackground.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineBackground.h @@ -9,6 +9,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** SplineBackground @@ -61,6 +62,7 @@ private: void exec(); }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/SplineInterpolation.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineInterpolation.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/SplineInterpolation.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineInterpolation.h index f74ba662a3c9666a289727a1e3116f61427d91a3..fbb797729d6c07784b7d6fa7efed53a4bfec8d2f 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/SplineInterpolation.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineInterpolation.h @@ -7,6 +7,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** Takes two workspaces as input. One contain a set of points which define a spline, @@ -91,6 +92,7 @@ private: int order) const; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/SplineSmoothing.h b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineSmoothing.h similarity index 98% rename from Framework/CurveFitting/inc/MantidCurveFitting/SplineSmoothing.h rename to Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineSmoothing.h index 86692dee31c4ed70e481f1e5e0b463e01fd00444..ee17aa3dca0fb55f9ece30aee9b9fb5fc0cc8503 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/SplineSmoothing.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Algorithms/SplineSmoothing.h @@ -8,6 +8,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /** Takes a 2D workspace and produces an output workspace containing a smoothed version of the data by selecting @@ -117,6 +118,7 @@ private: API::MatrixWorkspace_sptr m_outputWorkspace; }; +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/ComptonProfile.h b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/ComptonProfile.h index 5190737dc2d1239a0e2eb0177d3317015c184672..3fcc850f8a0f37f3025b46dc08c7541550df7f5f 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/ComptonProfile.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/ComptonProfile.h @@ -9,10 +9,12 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { //--------------------------------------------------------------------------- // Forward declarations //--------------------------------------------------------------------------- struct DetectorParams; +} namespace Functions { /** @@ -60,13 +62,13 @@ public: /// Pre-calculate the Y-space values with specified resolution parameters void cacheYSpaceValues(const std::vector<double> &tseconds, - const bool isHistogram, const CurveFitting::DetectorParams &detpar, + const bool isHistogram, const Algorithms::DetectorParams &detpar, const ResolutionParams &respar); /// Pre-calculate the Y-space values virtual void cacheYSpaceValues(const std::vector<double> &tseconds, const bool isHistogram, - const CurveFitting::DetectorParams &detpar); + const Algorithms::DetectorParams &detpar); /// Turn off logger void disableLogging() { m_log.setEnabled(false); } ///@} diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/GramCharlierComptonProfile.h b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/GramCharlierComptonProfile.h index 5a28323ba55a3c4efeced1b6f125f62bed8d7cf4..8425949c14319b4942b5a0047e1c7b116c09a8c9 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/GramCharlierComptonProfile.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/GramCharlierComptonProfile.h @@ -76,7 +76,7 @@ private: size_t wi, double startX, double endX); /// Pre-calculate the Y-space values void cacheYSpaceValues(const std::vector<double> &tseconds, - const bool isHistogram, const DetectorParams &detpar); + const bool isHistogram, const Algorithms::DetectorParams &detpar); /// The active hermite coefficents std::vector<short> m_hermite; diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/Lorentzian1D.h b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/Lorentzian1D.h index 0977728612c5850509fd14eb012872a3b1899485..6211f2d053b617abcf03f5084cc31ee7966ec979 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/Lorentzian1D.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/Lorentzian1D.h @@ -4,7 +4,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/Fit1D.h" +#include "MantidCurveFitting/Algorithms/Fit1D.h" namespace Mantid { namespace CurveFitting { @@ -51,7 +51,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>. File change history is stored at: <https://github.com/mantidproject/mantid> Code Documentation is available at: <http://doxygen.mantidproject.org> */ -class DLLExport Lorentzian1D : public Fit1D { +class DLLExport Lorentzian1D : public Algorithms::Fit1D { public: /// Destructor virtual ~Lorentzian1D(){}; diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/UserFunction1D.h b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/UserFunction1D.h index e8d09262245053945049377510f308c4923c24e0..fefde7f6549aa277abcce768ea6d1d2a5f6d7a43 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/UserFunction1D.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/UserFunction1D.h @@ -4,7 +4,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/Fit1D.h" +#include "MantidCurveFitting/Algorithms/Fit1D.h" #include "MantidGeometry/muParser_Silent.h" #include <boost/shared_array.hpp> @@ -71,7 +71,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>. File change history is stored at: <https://github.com/mantidproject/mantid> Code Documentation is available at: <http://doxygen.mantidproject.org> */ -class UserFunction1D : public Fit1D { +class UserFunction1D : public Algorithms::Fit1D { public: /// Constructor UserFunction1D() diff --git a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/VesuvioResolution.h b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/VesuvioResolution.h index 0dee35e10664b01d075743673351b34726ca81e1..4d0594a1818ec46a1e0f4535fb91d0343e6d84c2 100644 --- a/Framework/CurveFitting/inc/MantidCurveFitting/Functions/VesuvioResolution.h +++ b/Framework/CurveFitting/inc/MantidCurveFitting/Functions/VesuvioResolution.h @@ -8,10 +8,12 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { //--------------------------------------------------------------------------- // Forward declarations //--------------------------------------------------------------------------- struct DetectorParams; +} namespace Functions { @@ -83,7 +85,7 @@ public: setMatrixWorkspace(boost::shared_ptr<const API::MatrixWorkspace> workspace, size_t wi, double startX, double endX); /// Pre-calculate the resolution components values - void cacheResolutionComponents(const DetectorParams &detpar, + void cacheResolutionComponents(const Algorithms::DetectorParams &detpar, const ResolutionParams &respar); /// Turn off logger void disableLogging() { m_log.setEnabled(false); } diff --git a/Framework/CurveFitting/src/CalculateChiSquared.cpp b/Framework/CurveFitting/src/Algorithms/CalculateChiSquared.cpp similarity index 99% rename from Framework/CurveFitting/src/CalculateChiSquared.cpp rename to Framework/CurveFitting/src/Algorithms/CalculateChiSquared.cpp index 5c6016c6ba077eacf37bd7fcb5bf2c8554bb093a..17104a9e4b23dd8223a42f8cc5647bc397ee9d10 100644 --- a/Framework/CurveFitting/src/CalculateChiSquared.cpp +++ b/Framework/CurveFitting/src/Algorithms/CalculateChiSquared.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/CalculateChiSquared.h" +#include "MantidCurveFitting/Algorithms/CalculateChiSquared.h" #include "MantidAPI/ITableWorkspace.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidAPI/Column.h" @@ -8,6 +8,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace Kernel; using namespace API; @@ -652,5 +653,6 @@ void CalculateChiSquared::refixParameters() { } } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/CalculateGammaBackground.cpp b/Framework/CurveFitting/src/Algorithms/CalculateGammaBackground.cpp similarity index 96% rename from Framework/CurveFitting/src/CalculateGammaBackground.cpp rename to Framework/CurveFitting/src/Algorithms/CalculateGammaBackground.cpp index 35467b55fe113949670d243e2595ddcbb7469a51..c86a0fb231e540337252bcff296f640660d8610f 100644 --- a/Framework/CurveFitting/src/CalculateGammaBackground.cpp +++ b/Framework/CurveFitting/src/Algorithms/CalculateGammaBackground.cpp @@ -1,6 +1,6 @@ -#include "MantidCurveFitting/CalculateGammaBackground.h" +#include "MantidCurveFitting/Algorithms/CalculateGammaBackground.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidCurveFitting/Functions/ComptonProfile.h" -#include "MantidCurveFitting/ConvertToYSpace.h" #include "MantidCurveFitting/Functions/VesuvioResolution.h" #include "MantidAPI/CompositeFunction.h" @@ -16,9 +16,11 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace API; using namespace Kernel; -using namespace Functions; +using namespace CurveFitting; +using namespace CurveFitting::Functions; using namespace BOOST_FUNCTION_STD_NS; using namespace std; @@ -229,8 +231,8 @@ void CalculateGammaBackground::calculateSpectrumFromDetector( // -- Setup detector & resolution parameters -- DetectorParams detPar = ConvertToYSpace::getDetectorParameters(m_inputWS, inputIndex); - Functions::ResolutionParams detRes = - Functions::VesuvioResolution::getResolutionParameters(m_inputWS, inputIndex); + CurveFitting::Functions::ResolutionParams detRes = + CurveFitting::Functions::VesuvioResolution::getResolutionParameters(m_inputWS, inputIndex); // Compute a time of flight spectrum convolved with a Voigt resolution // function for each mass @@ -256,8 +258,8 @@ void CalculateGammaBackground::calculateBackgroundFromFoils( // -- Setup detector & resolution parameters -- DetectorParams detPar = ConvertToYSpace::getDetectorParameters(m_inputWS, inputIndex); - ResolutionParams detRes = - VesuvioResolution::getResolutionParameters(m_inputWS, inputIndex); + CurveFitting::Functions::ResolutionParams detRes = + CurveFitting::Functions::VesuvioResolution::getResolutionParameters(m_inputWS, inputIndex); const size_t nxvalues = m_backgroundWS->blocksize(); std::vector<double> foilSpectrum(nxvalues); @@ -322,7 +324,7 @@ void CalculateGammaBackground::calculateBackgroundSingleFoil( // Structs to hold geometry & resolution information DetectorParams foilPar = detPar; // copy foilPar.t0 = 0.0; - ResolutionParams foilRes = detRes; // copy + CurveFitting::Functions::ResolutionParams foilRes = detRes; // copy foilRes.dEnGauss = foilInfo.gaussWidth; foilRes.dEnLorentz = foilInfo.lorentzWidth; @@ -390,7 +392,7 @@ void CalculateGammaBackground::calculateTofSpectrum( FunctionFactory::Instance().createInitialized(m_profileFunction)); for (size_t i = 0; i < m_npeaks; ++i) { - auto profile = boost::dynamic_pointer_cast<ComptonProfile>( + auto profile = boost::dynamic_pointer_cast<CurveFitting::Functions::ComptonProfile>( profileFunction->getFunction(i)); profile->disableLogging(); profile->setUpForFit(); @@ -424,7 +426,7 @@ void CalculateGammaBackground::retrieveInputs() { boost::dynamic_pointer_cast<CompositeFunction>(profileFunction)) { m_npeaks = composite->nFunctions(); for (size_t i = 0; i < m_npeaks; ++i) { - auto single = boost::dynamic_pointer_cast<ComptonProfile>( + auto single = boost::dynamic_pointer_cast<CurveFitting::Functions::ComptonProfile>( composite->getFunction(i)); if (!single) { throw std::invalid_argument("Invalid function. Composite must contain " @@ -597,5 +599,6 @@ std::pair<double, double> CalculateGammaBackground::calculateThetaRange( return std::make_pair(theta - dtheta, theta + dtheta); } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/CalculateMSVesuvio.cpp b/Framework/CurveFitting/src/Algorithms/CalculateMSVesuvio.cpp similarity index 96% rename from Framework/CurveFitting/src/CalculateMSVesuvio.cpp rename to Framework/CurveFitting/src/Algorithms/CalculateMSVesuvio.cpp index ff8d17b1f56d15e31136c0f2a663abb0200b2e43..48a2acdd3752a6bf9e3412bea11c8983f4c5b067 100644 --- a/Framework/CurveFitting/src/CalculateMSVesuvio.cpp +++ b/Framework/CurveFitting/src/Algorithms/CalculateMSVesuvio.cpp @@ -1,9 +1,9 @@ //----------------------------------------------------------------------------- // Includes //----------------------------------------------------------------------------- -#include "MantidCurveFitting/CalculateMSVesuvio.h" +#include "MantidCurveFitting/Algorithms/CalculateMSVesuvio.h" // Use helpers for storing detector/resolution parameters -#include "MantidCurveFitting/ConvertToYSpace.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidCurveFitting/MSVesuvioHelpers.h" #include "MantidCurveFitting/Functions/VesuvioResolution.h" @@ -25,9 +25,11 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace API; using namespace Kernel; -using namespace Functions; +using namespace CurveFitting; +using namespace CurveFitting::Functions; using Geometry::Link; using Geometry::ParameterMap; using Geometry::Track; @@ -138,7 +140,7 @@ void CalculateMSVesuvio::exec() { MatrixWorkspace_sptr multsc = WorkspaceFactory::Instance().create(m_inputWS); // Initialize random number generator - m_randgen = new MSVesuvioHelper::RandomNumberGenerator(getProperty("Seed")); + m_randgen = new CurveFitting::MSVesuvioHelper::RandomNumberGenerator(getProperty("Seed")); // Setup progress const size_t nhist = m_inputWS->getNumberHistograms(); @@ -324,7 +326,7 @@ void CalculateMSVesuvio::calculateMS(const size_t wsIndex, Functions::VesuvioResolution::getResolutionParameters(m_inputWS, wsIndex); // Final counts averaged over all simulations - MSVesuvioHelper::SimulationAggregator accumulator(m_nruns); + CurveFitting::MSVesuvioHelper::SimulationAggregator accumulator(m_nruns); for (size_t i = 0; i < m_nruns; ++i) { m_progress->report("MS calculation: idx=" + boost::lexical_cast<std::string>(wsIndex) + ", run=" + @@ -339,7 +341,7 @@ void CalculateMSVesuvio::calculateMS(const size_t wsIndex, } // Average over all runs and assign to output workspaces - MSVesuvioHelper::SimulationWithErrors avgCounts = accumulator.average(); + CurveFitting::MSVesuvioHelper::SimulationWithErrors avgCounts = accumulator.average(); avgCounts.normalise(); assignToOutput(avgCounts, totalsc, multsc); } @@ -355,7 +357,7 @@ void CalculateMSVesuvio::calculateMS(const size_t wsIndex, */ void CalculateMSVesuvio::simulate( const DetectorParams &detpar, const ResolutionParams &respar, - MSVesuvioHelper::Simulation &simulCounts) const { + CurveFitting::MSVesuvioHelper::Simulation &simulCounts) const { for (size_t i = 0; i < m_nevents; ++i) { calculateCounts(detpar, respar, simulCounts); } @@ -370,7 +372,7 @@ void CalculateMSVesuvio::simulate( * scattering contribution */ void CalculateMSVesuvio::assignToOutput( - const MSVesuvioHelper::SimulationWithErrors &avgCounts, + const CurveFitting::MSVesuvioHelper::SimulationWithErrors &avgCounts, API::ISpectrum &totalsc, API::ISpectrum &multsc) const { // Sum up all multiple scatter events auto &msscatY = multsc.dataY(); @@ -405,7 +407,7 @@ void CalculateMSVesuvio::assignToOutput( */ double CalculateMSVesuvio::calculateCounts( const DetectorParams &detpar, const ResolutionParams &respar, - MSVesuvioHelper::Simulation &simulation) const { + CurveFitting::MSVesuvioHelper::Simulation &simulation) const { double weightSum(0.0); // moderator coord in lab frame @@ -786,13 +788,14 @@ double CalculateMSVesuvio::generateE1(const double angle, const double e1nom, const double randv = m_randgen->flat(); if (e1nom < 5000.0) { if (angle > 90.0) - return MSVesuvioHelper::finalEnergyAuDD(randv); + return CurveFitting::MSVesuvioHelper::finalEnergyAuDD(randv); else - return MSVesuvioHelper::finalEnergyAuYap(randv); + return CurveFitting::MSVesuvioHelper::finalEnergyAuYap(randv); } else { - return MSVesuvioHelper::finalEnergyUranium(randv); + return CurveFitting::MSVesuvioHelper::finalEnergyUranium(randv); } } } // namespace Algorithms +} // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/ConvertToYSpace.cpp b/Framework/CurveFitting/src/Algorithms/ConvertToYSpace.cpp similarity index 98% rename from Framework/CurveFitting/src/ConvertToYSpace.cpp rename to Framework/CurveFitting/src/Algorithms/ConvertToYSpace.cpp index e7c099c6f5d44cb04c4c958dc3115f5c79776928..1124ff0504e39bf341dc6e2d45f958ec507eeda8 100644 --- a/Framework/CurveFitting/src/ConvertToYSpace.cpp +++ b/Framework/CurveFitting/src/Algorithms/ConvertToYSpace.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/ConvertToYSpace.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidAPI/WorkspaceValidators.h" #include "MantidGeometry/Instrument/DetectorGroup.h" @@ -8,6 +8,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { // Register the algorithm into the AlgorithmFactory DECLARE_ALGORITHM(ConvertToYSpace) @@ -299,5 +300,6 @@ void ConvertToYSpace::cacheInstrumentGeometry() { m_samplePos = sample->getPos(); } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/ConvolveWorkspaces.cpp b/Framework/CurveFitting/src/Algorithms/ConvolveWorkspaces.cpp similarity index 96% rename from Framework/CurveFitting/src/ConvolveWorkspaces.cpp rename to Framework/CurveFitting/src/Algorithms/ConvolveWorkspaces.cpp index 3234f14e9eedd5cb3c8f096804ba6d13dd36040a..860d527201a1ef0c1501070ca0fb35f7b680b631 100644 --- a/Framework/CurveFitting/src/ConvolveWorkspaces.cpp +++ b/Framework/CurveFitting/src/Algorithms/ConvolveWorkspaces.cpp @@ -1,7 +1,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/ConvolveWorkspaces.h" +#include "MantidCurveFitting/Algorithms/ConvolveWorkspaces.h" #include "MantidCurveFitting/Functions/Convolution.h" #include "MantidCurveFitting/Functions/TabulatedFunction.h" #include <sstream> @@ -11,6 +11,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { // Register the algorithm into the AlgorithmFactory DECLARE_ALGORITHM(ConvolveWorkspaces) @@ -97,4 +98,5 @@ void ConvolveWorkspaces::exec() { } } // namespace Algorithms +} // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/EstimatePeakErrors.cpp b/Framework/CurveFitting/src/Algorithms/EstimatePeakErrors.cpp similarity index 98% rename from Framework/CurveFitting/src/EstimatePeakErrors.cpp rename to Framework/CurveFitting/src/Algorithms/EstimatePeakErrors.cpp index aa69cb5b550de1ad9726c8bd297d41f4504a5bdc..3990ef3fbabf9c2d809877eac4c9ca43622d12b0 100644 --- a/Framework/CurveFitting/src/EstimatePeakErrors.cpp +++ b/Framework/CurveFitting/src/Algorithms/EstimatePeakErrors.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/EstimatePeakErrors.h" +#include "MantidCurveFitting/Algorithms/EstimatePeakErrors.h" #include "MantidCurveFitting/GSLMatrix.h" #include "MantidCurveFitting/Functions/PeakParameterFunction.h" @@ -12,6 +12,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace API; using namespace Kernel; using namespace std; @@ -164,5 +165,6 @@ void EstimatePeakErrors::exec() { setProperty("OutputWorkspace", results); } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/EvaluateFunction.cpp b/Framework/CurveFitting/src/Algorithms/EvaluateFunction.cpp similarity index 94% rename from Framework/CurveFitting/src/EvaluateFunction.cpp rename to Framework/CurveFitting/src/Algorithms/EvaluateFunction.cpp index d5c5e9e7099de52de4bcca1fd6203f2ed22cc061..9e072bd88875299e3e259ac3f7b024717c91d27e 100644 --- a/Framework/CurveFitting/src/EvaluateFunction.cpp +++ b/Framework/CurveFitting/src/Algorithms/EvaluateFunction.cpp @@ -1,7 +1,8 @@ -#include "MantidCurveFitting/EvaluateFunction.h" +#include "MantidCurveFitting/Algorithms/EvaluateFunction.h" namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace Mantid::Kernel; using namespace Mantid::API; @@ -55,5 +56,6 @@ void EvaluateFunction::execConcrete() { setProperty("OutputWorkspace", outputWS); } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/Fit.cpp b/Framework/CurveFitting/src/Algorithms/Fit.cpp similarity index 99% rename from Framework/CurveFitting/src/Fit.cpp rename to Framework/CurveFitting/src/Algorithms/Fit.cpp index 95bae234e21f9c80d9e36c9b8d8a56aab6b049e6..b10b66a8a918dca32327fc32d80a04a0136e399e 100644 --- a/Framework/CurveFitting/src/Fit.cpp +++ b/Framework/CurveFitting/src/Algorithms/Fit.cpp @@ -1,7 +1,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/CostFunctions/CostFuncFitting.h" #include "MantidAPI/CostFunctionFactory.h" @@ -18,6 +18,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { // Register the class into the algorithm factory DECLARE_ALGORITHM(Fit) @@ -362,5 +363,6 @@ void Fit::execConcrete() { progress(1.0); } -} // namespace Algorithm +} // namespace Algorithms +} // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/Fit1D.cpp b/Framework/CurveFitting/src/Algorithms/Fit1D.cpp similarity index 99% rename from Framework/CurveFitting/src/Fit1D.cpp rename to Framework/CurveFitting/src/Algorithms/Fit1D.cpp index f4c054ddc095e1976d0812b46d7c2373ed6bc562..3710f49389ff760c5db775d2b1c3ecb8fb51441b 100644 --- a/Framework/CurveFitting/src/Fit1D.cpp +++ b/Framework/CurveFitting/src/Algorithms/Fit1D.cpp @@ -1,7 +1,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/Fit1D.h" +#include "MantidCurveFitting/Algorithms/Fit1D.h" #include <sstream> #include <numeric> #include <cmath> @@ -21,6 +21,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace Kernel; using API::WorkspaceProperty; @@ -777,5 +778,6 @@ FitData::FitData(Fit1D *fit, const std::string &fixed) J.m_map[i] = -1; } -} // namespace Algorithm +} // namespace Algorithms +} // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/FitPowderDiffPeaks.cpp b/Framework/CurveFitting/src/Algorithms/FitPowderDiffPeaks.cpp similarity index 99% rename from Framework/CurveFitting/src/FitPowderDiffPeaks.cpp rename to Framework/CurveFitting/src/Algorithms/FitPowderDiffPeaks.cpp index 4506e6acd5bfdfc82775d095840d43f2e1b00529..72eb9e1db570b9aa0bf7a7056ba7a0df99c5f92c 100644 --- a/Framework/CurveFitting/src/FitPowderDiffPeaks.cpp +++ b/Framework/CurveFitting/src/Algorithms/FitPowderDiffPeaks.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/FitPowderDiffPeaks.h" +#include "MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h" #include "MantidKernel/ListValidator.h" #include "MantidKernel/ArrayProperty.h" @@ -16,7 +16,7 @@ #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/TextAxis.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" #include "MantidCurveFitting/Functions/BackgroundFunction.h" #include "MantidCurveFitting/Functions/ThermalNeutronDtoTOFFunction.h" @@ -58,6 +58,7 @@ using namespace std; namespace Mantid { namespace CurveFitting { +namespace Algorithms { DECLARE_ALGORITHM(FitPowderDiffPeaks) @@ -3450,5 +3451,6 @@ size_t findMaxValue(MatrixWorkspace_sptr dataws, size_t wsindex, return imax; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/LeBailFit.cpp b/Framework/CurveFitting/src/Algorithms/LeBailFit.cpp similarity index 99% rename from Framework/CurveFitting/src/LeBailFit.cpp rename to Framework/CurveFitting/src/Algorithms/LeBailFit.cpp index 22e7a9340d1ccc65515b0692756438c6919fd01b..199a2233541310638b26851b990c1001e77245e4 100644 --- a/Framework/CurveFitting/src/LeBailFit.cpp +++ b/Framework/CurveFitting/src/Algorithms/LeBailFit.cpp @@ -4,12 +4,12 @@ * COMMIT NOTES */ -#include "MantidCurveFitting/LeBailFit.h" +#include "MantidCurveFitting/Algorithms/LeBailFit.h" #include "MantidKernel/ListValidator.h" #include "MantidAPI/TableRow.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/FuncMinimizerFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/ArrayProperty.h" #include "MantidKernel/VisibleWhenProperty.h" #include "MantidCurveFitting/Functions/BackgroundFunction.h" @@ -44,6 +44,7 @@ using namespace std; namespace Mantid { namespace CurveFitting { +namespace Algorithms { const Rfactor badR(DBL_MAX, DBL_MAX); @@ -2692,5 +2693,6 @@ void writeRfactorsToFile(vector<double> vecX, vector<Rfactor> vecR, return; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/LeBailFunction.cpp b/Framework/CurveFitting/src/Algorithms/LeBailFunction.cpp similarity index 99% rename from Framework/CurveFitting/src/LeBailFunction.cpp rename to Framework/CurveFitting/src/Algorithms/LeBailFunction.cpp index 6835b74fea4c67b9127fa0c8082e4c1cacbe2930..0c01dcc99944c5a2fed697b2ee53b86e808e67a0 100644 --- a/Framework/CurveFitting/src/LeBailFunction.cpp +++ b/Framework/CurveFitting/src/Algorithms/LeBailFunction.cpp @@ -1,9 +1,9 @@ #include "MantidAPI/Algorithm.h" -#include "MantidCurveFitting/LeBailFunction.h" +#include "MantidCurveFitting/Algorithms/LeBailFunction.h" #include "MantidKernel/System.h" #include "MantidAPI/FunctionFactory.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include <sstream> @@ -18,6 +18,7 @@ const double NEG_DBL_MAX(-1. * DBL_MAX); namespace Mantid { namespace CurveFitting { +namespace Algorithms { namespace { const double PEAKRANGECONSTANT = 5.0; @@ -1153,4 +1154,5 @@ double LeBailFunction::getPeakMaximumValue(std::vector<int> hkl, } } // namespace Mantid +} // namespace Algorithms } // namespace CurveFitting diff --git a/Framework/CurveFitting/src/NormaliseByPeakArea.cpp b/Framework/CurveFitting/src/Algorithms/NormaliseByPeakArea.cpp similarity index 99% rename from Framework/CurveFitting/src/NormaliseByPeakArea.cpp rename to Framework/CurveFitting/src/Algorithms/NormaliseByPeakArea.cpp index f3a7522bbfac8b7f93e12d9980b70f9c502b4814..780f0feb4261bf251d0c137fae577124e818ec44 100644 --- a/Framework/CurveFitting/src/NormaliseByPeakArea.cpp +++ b/Framework/CurveFitting/src/Algorithms/NormaliseByPeakArea.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/NormaliseByPeakArea.h" +#include "MantidCurveFitting/Algorithms/NormaliseByPeakArea.h" #include "MantidAPI/IFunction.h" #include "MantidAPI/FunctionFactory.h" @@ -10,6 +10,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { /// Starting value of peak position in y-space for fit double PEAK_POS_GUESS = -0.1; @@ -381,5 +382,6 @@ void NormaliseByPeakArea::symmetriseYSpace() { } } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/PawleyFit.cpp b/Framework/CurveFitting/src/Algorithms/PawleyFit.cpp similarity index 99% rename from Framework/CurveFitting/src/PawleyFit.cpp rename to Framework/CurveFitting/src/Algorithms/PawleyFit.cpp index 90c55982d74c0e3b963e081ec8daad8327df1ff7..a8debbfa28d9c39b6401032506e0b92b960d85ea 100644 --- a/Framework/CurveFitting/src/PawleyFit.cpp +++ b/Framework/CurveFitting/src/Algorithms/PawleyFit.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/PawleyFit.h" +#include "MantidCurveFitting/Algorithms/PawleyFit.h" #include "MantidAPI/FunctionFactory.h" #include "MantidCurveFitting/Functions/PawleyFunction.h" @@ -14,6 +14,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace API; using namespace Kernel; @@ -416,5 +417,6 @@ V3D V3DFromHKLColumnExtractor::getHKLFromString( return hkl; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/PlotPeakByLogValue.cpp b/Framework/CurveFitting/src/Algorithms/PlotPeakByLogValue.cpp similarity index 99% rename from Framework/CurveFitting/src/PlotPeakByLogValue.cpp rename to Framework/CurveFitting/src/Algorithms/PlotPeakByLogValue.cpp index f380f15c43c792e136b2fa2f5451103819fb68b2..11392adee19dc945b290e423484b89de3a8117de 100644 --- a/Framework/CurveFitting/src/PlotPeakByLogValue.cpp +++ b/Framework/CurveFitting/src/Algorithms/PlotPeakByLogValue.cpp @@ -11,7 +11,7 @@ #include <boost/lexical_cast.hpp> #include <boost/algorithm/string/replace.hpp> -#include "MantidCurveFitting/PlotPeakByLogValue.h" +#include "MantidCurveFitting/Algorithms/PlotPeakByLogValue.h" #include "MantidAPI/IFuncMinimizer.h" #include "MantidAPI/AlgorithmManager.h" #include "MantidAPI/FuncMinimizerFactory.h" @@ -36,6 +36,7 @@ Mantid::Kernel::Logger g_log("PlotPeakByLogValue"); namespace Mantid { namespace CurveFitting { +namespace Algorithms { using namespace Kernel; using namespace API; @@ -619,5 +620,6 @@ PlotPeakByLogValue::getMinimizerString(const std::string &wsName, return format; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/RefinePowderInstrumentParameters.cpp b/Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters.cpp similarity index 97% rename from Framework/CurveFitting/src/RefinePowderInstrumentParameters.cpp rename to Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters.cpp index 56a400e3b11d329ebde5463760d0e7e9b4c5e117..3423ca0b62113f5c55226a9e0bb793456a36a73e 100644 --- a/Framework/CurveFitting/src/RefinePowderInstrumentParameters.cpp +++ b/Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/RefinePowderInstrumentParameters.h" +#include "MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h" #include "MantidKernel/ListValidator.h" #include "MantidKernel/ArrayProperty.h" @@ -14,11 +14,11 @@ #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/TextAxis.h" -#include "MantidCurveFitting/Fit.h" -#include "MantidCurveFitting/BackgroundFunction.h" -#include "MantidCurveFitting/Polynomial.h" -#include "MantidCurveFitting/BoundaryConstraint.h" -#include "MantidCurveFitting/Gaussian.h" +#include "MantidCurveFitting/Algorithms/Fit.h" +#include "MantidCurveFitting/Constraints/BoundaryConstraint.h" +#include "MantidCurveFitting/Functions/BackgroundFunction.h" +#include "MantidCurveFitting/Functions/Polynomial.h" +#include "MantidCurveFitting/Functions/Gaussian.h" #include "MantidGeometry/Crystal/UnitCell.h" @@ -34,11 +34,15 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::Kernel; using namespace Mantid::DataObjects; +using namespace Mantid::CurveFitting::Algorithms; +using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Constraints; using namespace std; namespace Mantid { namespace CurveFitting { +namespace Algorithms { DECLARE_ALGORITHM(RefinePowderInstrumentParameters) @@ -224,9 +228,9 @@ void RefinePowderInstrumentParameters::fitInstrumentParameters() { << endl; // 1. Initialize the fitting function - CurveFitting::ThermalNeutronDtoTOFFunction rawfunc; + ThermalNeutronDtoTOFFunction rawfunc; mFunction = - boost::make_shared<CurveFitting::ThermalNeutronDtoTOFFunction>(rawfunc); + boost::make_shared<ThermalNeutronDtoTOFFunction>(rawfunc); mFunction->initialize(); API::FunctionDomain1DVector domain(dataWS->readX(1)); @@ -803,7 +807,7 @@ void RefinePowderInstrumentParameters::getD2TOFFuncParamNames( parnames.clear(); // 2. Get the parameter names from function - CurveFitting::ThermalNeutronDtoTOFFunction d2toffunc; + ThermalNeutronDtoTOFFunction d2toffunc; d2toffunc.initialize(); std::vector<std::string> funparamnames = d2toffunc.getParameterNames(); @@ -879,7 +883,7 @@ void RefinePowderInstrumentParameters::genPeaksFromTable( for (size_t ir = 0; ir < numrows; ++ir) { // a) Generate peak - CurveFitting::BackToBackExponential newpeak; + BackToBackExponential newpeak; newpeak.initialize(); // b) Parse parameters @@ -930,8 +934,8 @@ void RefinePowderInstrumentParameters::genPeaksFromTable( newpeak.setParameter("I", height); // d) Make to share pointer and set to instance data structure (map) - CurveFitting::BackToBackExponential_sptr newpeakptr = - boost::make_shared<CurveFitting::BackToBackExponential>(newpeak); + BackToBackExponential_sptr newpeakptr = + boost::make_shared<BackToBackExponential>(newpeak); std::vector<int> hkl; hkl.push_back(h); @@ -1168,7 +1172,7 @@ void RefinePowderInstrumentParameters::genPeakCentersWorkspace( throw runtime_error(errss.str()); } - std::map<std::vector<int>, CurveFitting::BackToBackExponential_sptr>::iterator + std::map<std::vector<int>, BackToBackExponential_sptr>::iterator peakiter; std::vector<std::pair<double, std::pair<double, double>>> peakcenters; // d_h [TOF_h, CHI2] @@ -1300,5 +1304,6 @@ RefinePowderInstrumentParameters::genOutputInstrumentParameterTable() { return newtablews; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/RefinePowderInstrumentParameters3.cpp b/Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters3.cpp similarity index 99% rename from Framework/CurveFitting/src/RefinePowderInstrumentParameters3.cpp rename to Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters3.cpp index 22c96159ba9bcb39f9be9ed40b89532da6a62974..5f146549166932d416f816b99b813c9c1c507d1f 100644 --- a/Framework/CurveFitting/src/RefinePowderInstrumentParameters3.cpp +++ b/Framework/CurveFitting/src/Algorithms/RefinePowderInstrumentParameters3.cpp @@ -1,4 +1,4 @@ -#include "MantidCurveFitting/RefinePowderInstrumentParameters3.h" +#include "MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h" #include "MantidAPI/Axis.h" #include "MantidAPI/TextAxis.h" @@ -14,6 +14,7 @@ using namespace std; namespace Mantid { namespace CurveFitting { +namespace Algorithms { DECLARE_ALGORITHM(RefinePowderInstrumentParameters3) @@ -1429,5 +1430,6 @@ void restoreFunctionParameterValue( return; } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/SplineBackground.cpp b/Framework/CurveFitting/src/Algorithms/SplineBackground.cpp similarity index 97% rename from Framework/CurveFitting/src/SplineBackground.cpp rename to Framework/CurveFitting/src/Algorithms/SplineBackground.cpp index d3eddbab62067a8297f96e73f2911bfccfe6eab8..93b2e86016a7320e17d3ae657789ec49ad86da6f 100644 --- a/Framework/CurveFitting/src/SplineBackground.cpp +++ b/Framework/CurveFitting/src/Algorithms/SplineBackground.cpp @@ -1,7 +1,7 @@ //---------------------------------------------------------------------- // Includes //---------------------------------------------------------------------- -#include "MantidCurveFitting/SplineBackground.h" +#include "MantidCurveFitting/Algorithms/SplineBackground.h" #include <gsl/gsl_bspline.h> #include <gsl/gsl_multifit.h> #include <gsl/gsl_statistics.h> @@ -9,6 +9,7 @@ namespace Mantid { namespace CurveFitting { +namespace Algorithms { DECLARE_ALGORITHM(SplineBackground) @@ -170,5 +171,6 @@ void SplineBackground::exec() { setProperty("OutputWorkspace", outWS); } -} // namespace Algorithm +} // namespace Algorithms +} // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/SplineInterpolation.cpp b/Framework/CurveFitting/src/Algorithms/SplineInterpolation.cpp similarity index 98% rename from Framework/CurveFitting/src/SplineInterpolation.cpp rename to Framework/CurveFitting/src/Algorithms/SplineInterpolation.cpp index 37a81ceee3ce744dd5ec1e9fb8407a67fa5ebcce..9d1a1bc531c9d0dc3c765ddf3a904e1bf1955a7c 100644 --- a/Framework/CurveFitting/src/SplineInterpolation.cpp +++ b/Framework/CurveFitting/src/Algorithms/SplineInterpolation.cpp @@ -2,10 +2,11 @@ #include "MantidAPI/NumericAxis.h" #include "MantidAPI/Progress.h" #include "MantidKernel/BoundedValidator.h" -#include "MantidCurveFitting/SplineInterpolation.h" +#include "MantidCurveFitting/Algorithms/SplineInterpolation.h" namespace Mantid { namespace CurveFitting { +namespace Algorithms { // Register the algorithm into the AlgorithmFactory DECLARE_ALGORITHM(SplineInterpolation) @@ -254,5 +255,6 @@ void SplineInterpolation::calculateSpline( m_cspline->function1D(yValues, xValues, nData); } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/SplineSmoothing.cpp b/Framework/CurveFitting/src/Algorithms/SplineSmoothing.cpp similarity index 99% rename from Framework/CurveFitting/src/SplineSmoothing.cpp rename to Framework/CurveFitting/src/Algorithms/SplineSmoothing.cpp index 9c942956ac08e3169a28f39c02704bddf7dc0a9d..87fcfb16e36bfd4af6e18a84ed51b9c459f27e3c 100644 --- a/Framework/CurveFitting/src/SplineSmoothing.cpp +++ b/Framework/CurveFitting/src/Algorithms/SplineSmoothing.cpp @@ -4,12 +4,13 @@ #include "MantidAPI/TextAxis.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidKernel/BoundedValidator.h" -#include "MantidCurveFitting/SplineSmoothing.h" +#include "MantidCurveFitting/Algorithms/SplineSmoothing.h" #include <algorithm> namespace Mantid { namespace CurveFitting { +namespace Algorithms { // Register the algorithm into the AlgorithmFactory DECLARE_ALGORITHM(SplineSmoothing) @@ -370,5 +371,6 @@ void SplineSmoothing::selectSmoothingPoints( } } +} // namespace Algorithms } // namespace CurveFitting } // namespace Mantid diff --git a/Framework/CurveFitting/src/Functions/ComptonPeakProfile.cpp b/Framework/CurveFitting/src/Functions/ComptonPeakProfile.cpp index f13a5e20c075340bb990222310745efa8cb54089..9408c811342219f80e22a3ab8bac607bd97a232b 100644 --- a/Framework/CurveFitting/src/Functions/ComptonPeakProfile.cpp +++ b/Framework/CurveFitting/src/Functions/ComptonPeakProfile.cpp @@ -2,7 +2,7 @@ // Includes //----------------------------------------------------------------------------- #include "MantidCurveFitting/Functions/ComptonPeakProfile.h" -#include "MantidCurveFitting/ConvertToYSpace.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidAPI/FunctionFactory.h" #include <cmath> @@ -10,8 +10,9 @@ namespace Mantid { namespace CurveFitting { namespace Functions { + -using namespace CurveFitting; +using namespace CurveFitting::Algorithms; DECLARE_FUNCTION(ComptonPeakProfile) diff --git a/Framework/CurveFitting/src/Functions/ComptonProfile.cpp b/Framework/CurveFitting/src/Functions/ComptonProfile.cpp index 0810d501baf30b8e1ba11c98176bce304ae5e1ef..a7560b705db7e15a097f55d4177f475e0464c694 100644 --- a/Framework/CurveFitting/src/Functions/ComptonProfile.cpp +++ b/Framework/CurveFitting/src/Functions/ComptonProfile.cpp @@ -2,15 +2,16 @@ // Includes //----------------------------------------------------------------------------- #include "MantidCurveFitting/Functions/ComptonProfile.h" -#include "MantidCurveFitting/ConvertToYSpace.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidAPI/FunctionFactory.h" #include <gsl/gsl_poly.h> namespace Mantid { namespace CurveFitting { namespace Functions { - + using namespace CurveFitting; +using namespace CurveFitting::Algorithms; namespace { ///@cond @@ -97,7 +98,7 @@ void ComptonProfile::setMatrixWorkspace( m_resolutionFunction->setAttributeValue("Mass", m_mass); m_resolutionFunction->setMatrixWorkspace(workspace, wsIndex, startX, endX); - CurveFitting::DetectorParams detpar = + Algorithms::DetectorParams detpar = ConvertToYSpace::getDetectorParameters(workspace, m_wsIndex); this->cacheYSpaceValues(workspace->readX(m_wsIndex), workspace->isHistogramData(), detpar); @@ -105,7 +106,7 @@ void ComptonProfile::setMatrixWorkspace( void ComptonProfile::cacheYSpaceValues(const std::vector<double> &tseconds, const bool isHistogram, - const CurveFitting::DetectorParams &detpar, + const Algorithms::DetectorParams &detpar, const ResolutionParams &respar) { m_resolutionFunction->cacheResolutionComponents(detpar, respar); this->cacheYSpaceValues(tseconds, isHistogram, detpar); @@ -118,7 +119,7 @@ void ComptonProfile::cacheYSpaceValues(const std::vector<double> &tseconds, */ void ComptonProfile::cacheYSpaceValues(const std::vector<double> &tseconds, const bool isHistogram, - const CurveFitting::DetectorParams &detpar) { + const Algorithms::DetectorParams &detpar) { // ------ Fixed coefficients related to resolution & Y-space transforms // ------------------ const double mevToK = PhysicalConstants::E_mev_toNeutronWavenumberSq; diff --git a/Framework/CurveFitting/src/Functions/GramCharlierComptonProfile.cpp b/Framework/CurveFitting/src/Functions/GramCharlierComptonProfile.cpp index 40efd9a5ea24c3df05c1c295f000a31b7fb1b5ee..16960d97dab6eb7f7dfa76927cd465d6cd959c9d 100644 --- a/Framework/CurveFitting/src/Functions/GramCharlierComptonProfile.cpp +++ b/Framework/CurveFitting/src/Functions/GramCharlierComptonProfile.cpp @@ -368,7 +368,7 @@ void GramCharlierComptonProfile::setMatrixWorkspace( */ void GramCharlierComptonProfile::cacheYSpaceValues( const std::vector<double> &tseconds, const bool isHistogram, - const DetectorParams &detpar) { + const Algorithms::DetectorParams &detpar) { ComptonProfile::cacheYSpaceValues(tseconds, isHistogram, detpar); // base-class calculations diff --git a/Framework/CurveFitting/src/Functions/IkedaCarpenterPV.cpp b/Framework/CurveFitting/src/Functions/IkedaCarpenterPV.cpp index b74d920b0eae28a2cbffa31f5cf8d21f95053c5d..20fce38bd90881ffc88d94d6dcb402633a75c4c9 100644 --- a/Framework/CurveFitting/src/Functions/IkedaCarpenterPV.cpp +++ b/Framework/CurveFitting/src/Functions/IkedaCarpenterPV.cpp @@ -33,7 +33,7 @@ Kernel::Logger g_log("IkedaCarpenterPV"); using namespace Kernel; -using namespace SpecialFunctionSupport; +using namespace CurveFitting::SpecialFunctionSupport; using namespace Geometry; using namespace Constraints; diff --git a/Framework/CurveFitting/src/Functions/VesuvioResolution.cpp b/Framework/CurveFitting/src/Functions/VesuvioResolution.cpp index e1acbb1aba3cf0eab96d39f2ba6e98848e3951cd..0dcf67b8f02286e42b9ccf9b73854895cb88f36c 100644 --- a/Framework/CurveFitting/src/Functions/VesuvioResolution.cpp +++ b/Framework/CurveFitting/src/Functions/VesuvioResolution.cpp @@ -2,15 +2,17 @@ // Includes //----------------------------------------------------------------------------- #include "MantidCurveFitting/Functions/VesuvioResolution.h" -#include "MantidCurveFitting/ConvertToYSpace.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" #include "MantidAPI/FunctionFactory.h" #include <gsl/gsl_poly.h> namespace Mantid { namespace CurveFitting { namespace Functions { - -using namespace CurveFitting; + +using namespace Mantid; +using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; namespace { ///@cond const char *MASS_NAME = "Mass"; @@ -112,7 +114,7 @@ void VesuvioResolution::setMatrixWorkspace( * @param respar Structure containing resolution parameters */ void VesuvioResolution::cacheResolutionComponents( - const DetectorParams &detpar, const ResolutionParams &respar) { + const Algorithms::DetectorParams &detpar, const ResolutionParams &respar) { // geometry double theta = detpar.theta; // cache for frequent access double hwhmLorentzE = respar.dEnLorentz; diff --git a/Framework/CurveFitting/src/LatticeDomainCreator.cpp b/Framework/CurveFitting/src/LatticeDomainCreator.cpp index 69901d090985206b121217ff3a25cc940bff389d..db2ebe4bde9fca3df9b46c7a12805e94876df8e1 100644 --- a/Framework/CurveFitting/src/LatticeDomainCreator.cpp +++ b/Framework/CurveFitting/src/LatticeDomainCreator.cpp @@ -9,7 +9,7 @@ #include "MantidAPI/WorkspaceFactory.h" #include "MantidDataObjects/Peak.h" -#include "MantidCurveFitting/PawleyFit.h" +#include "MantidCurveFitting/Algorithms/PawleyFit.h" namespace Mantid { namespace CurveFitting { @@ -17,6 +17,7 @@ namespace CurveFitting { using namespace API; using namespace Kernel; using namespace DataObjects; +using namespace CurveFitting::Algorithms; /// Constructor LatticeDomainCreator::LatticeDomainCreator( diff --git a/Framework/CurveFitting/test/CalculateChiSquaredTest.h b/Framework/CurveFitting/test/Algorithms/CalculateChiSquaredTest.h similarity index 99% rename from Framework/CurveFitting/test/CalculateChiSquaredTest.h rename to Framework/CurveFitting/test/Algorithms/CalculateChiSquaredTest.h index 39fb96307a24056335df98216d80fd5641bf899b..fb29bda4b80738fd99f9a2d89838ab547850f606 100644 --- a/Framework/CurveFitting/test/CalculateChiSquaredTest.h +++ b/Framework/CurveFitting/test/Algorithms/CalculateChiSquaredTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/CalculateChiSquared.h" +#include "MantidCurveFitting/Algorithms/CalculateChiSquared.h" #include "MantidAPI/FunctionDomain1D.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/FunctionValues.h" @@ -16,7 +16,7 @@ #include <boost/math/special_functions/fpclassify.hpp> #include <limits> -using Mantid::CurveFitting::CalculateChiSquared; +using Mantid::CurveFitting::Algorithms::CalculateChiSquared; using namespace Mantid; using namespace Mantid::API; diff --git a/Framework/CurveFitting/test/CalculateGammaBackgroundTest.h b/Framework/CurveFitting/test/Algorithms/CalculateGammaBackgroundTest.h similarity index 98% rename from Framework/CurveFitting/test/CalculateGammaBackgroundTest.h rename to Framework/CurveFitting/test/Algorithms/CalculateGammaBackgroundTest.h index 8fdc2508eced2b78d1194164b186955e271d061e..502479b5f363c09a4312cdab88c88b92e233be80 100644 --- a/Framework/CurveFitting/test/CalculateGammaBackgroundTest.h +++ b/Framework/CurveFitting/test/Algorithms/CalculateGammaBackgroundTest.h @@ -3,10 +3,10 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/CalculateGammaBackground.h" -#include "Functions/ComptonProfileTestHelpers.h" +#include "MantidCurveFitting/Algorithms/CalculateGammaBackground.h" +#include "../Functions/ComptonProfileTestHelpers.h" -using Mantid::CurveFitting::CalculateGammaBackground; +using Mantid::CurveFitting::Algorithms::CalculateGammaBackground; class CalculateGammaBackgroundTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/CalculateMSVesuvioTest.h b/Framework/CurveFitting/test/Algorithms/CalculateMSVesuvioTest.h similarity index 98% rename from Framework/CurveFitting/test/CalculateMSVesuvioTest.h rename to Framework/CurveFitting/test/Algorithms/CalculateMSVesuvioTest.h index b1cd29c4d738dbd71eaabf473920395d6604f588..f6eefbb0e35fd18579c0e7b04b0cc30398b88512 100644 --- a/Framework/CurveFitting/test/CalculateMSVesuvioTest.h +++ b/Framework/CurveFitting/test/Algorithms/CalculateMSVesuvioTest.h @@ -5,7 +5,7 @@ #include "boost/version.hpp" -#include "MantidCurveFitting/CalculateMSVesuvio.h" +#include "MantidCurveFitting/Algorithms/CalculateMSVesuvio.h" #include "MantidGeometry/Instrument/Goniometer.h" #include "MantidGeometry/Instrument/Detector.h" #include "MantidGeometry/Objects/ShapeFactory.h" @@ -13,9 +13,9 @@ #include "MantidTestHelpers/ComponentCreationHelper.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" -#include "Functions/ComptonProfileTestHelpers.h" +#include "../Functions/ComptonProfileTestHelpers.h" -using Mantid::CurveFitting::CalculateMSVesuvio; +using Mantid::CurveFitting::Algorithms::CalculateMSVesuvio; class CalculateMSVesuvioTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/ConvertToYSpaceTest.h b/Framework/CurveFitting/test/Algorithms/ConvertToYSpaceTest.h similarity index 96% rename from Framework/CurveFitting/test/ConvertToYSpaceTest.h rename to Framework/CurveFitting/test/Algorithms/ConvertToYSpaceTest.h index c439658b075daf32105cdbadffb1c21f74eda4e0..839a9202dcdaa6ca483a5d439f97522d1dba0471 100644 --- a/Framework/CurveFitting/test/ConvertToYSpaceTest.h +++ b/Framework/CurveFitting/test/Algorithms/ConvertToYSpaceTest.h @@ -3,10 +3,10 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/ConvertToYSpace.h" -#include "Functions/ComptonProfileTestHelpers.h" +#include "MantidCurveFitting/Algorithms/ConvertToYSpace.h" +#include "../Functions/ComptonProfileTestHelpers.h" -using Mantid::CurveFitting::ConvertToYSpace; +using Mantid::CurveFitting::Algorithms::ConvertToYSpace; class ConvertToYSpaceTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/ConvolveWorkspacesTest.h b/Framework/CurveFitting/test/Algorithms/ConvolveWorkspacesTest.h similarity index 94% rename from Framework/CurveFitting/test/ConvolveWorkspacesTest.h rename to Framework/CurveFitting/test/Algorithms/ConvolveWorkspacesTest.h index 64d07f6281f49ebc61c14b256a1cb314cb664c94..fe9dc90f597485b84dc5257466b1ec3f8a180aed 100644 --- a/Framework/CurveFitting/test/ConvolveWorkspacesTest.h +++ b/Framework/CurveFitting/test/Algorithms/ConvolveWorkspacesTest.h @@ -5,8 +5,8 @@ #include "MantidAPI/FrameworkManager.h" #include "MantidAPI/AnalysisDataService.h" -#include "MantidCurveFitting/ConvolveWorkspaces.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/ConvolveWorkspaces.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidAPI/IPeakFunction.h" #include "MantidAPI/TableRow.h" @@ -21,6 +21,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::DataObjects; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; class ConvolveWorkspacesTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/EstimatePeakErrorsTest.h b/Framework/CurveFitting/test/Algorithms/EstimatePeakErrorsTest.h similarity index 98% rename from Framework/CurveFitting/test/EstimatePeakErrorsTest.h rename to Framework/CurveFitting/test/Algorithms/EstimatePeakErrorsTest.h index 3ea8b1328cfa5098cdffdc2af7219645d00b2a4f..04baa92e562d387740477077d681853d54945792 100644 --- a/Framework/CurveFitting/test/EstimatePeakErrorsTest.h +++ b/Framework/CurveFitting/test/Algorithms/EstimatePeakErrorsTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/EstimatePeakErrors.h" +#include "MantidCurveFitting/Algorithms/EstimatePeakErrors.h" #include "MantidAPI/AlgorithmManager.h" #include "MantidAPI/AnalysisDataService.h" @@ -19,6 +19,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace WorkspaceCreationHelper; class EstimatePeakErrorsTest : public CxxTest::TestSuite { diff --git a/Framework/CurveFitting/test/EvaluateFunctionTest.h b/Framework/CurveFitting/test/Algorithms/EvaluateFunctionTest.h similarity index 98% rename from Framework/CurveFitting/test/EvaluateFunctionTest.h rename to Framework/CurveFitting/test/Algorithms/EvaluateFunctionTest.h index 22e8a5aac0777d3003c7215b26ff7a1eb1f1f18f..cf8b80f4d991cbd76fe4a197c039c5eea0e15e6f 100644 --- a/Framework/CurveFitting/test/EvaluateFunctionTest.h +++ b/Framework/CurveFitting/test/Algorithms/EvaluateFunctionTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/EvaluateFunction.h" +#include "MantidCurveFitting/Algorithms/EvaluateFunction.h" #include "MantidAPI/AlgorithmManager.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/FunctionFactory.h" @@ -15,7 +15,7 @@ #include "MantidAPI/MatrixWorkspace.h" #include "MantidKernel/EmptyValues.h" -using Mantid::CurveFitting::EvaluateFunction; +using Mantid::CurveFitting::Algorithms::EvaluateFunction; using namespace Mantid; using namespace Mantid::API; diff --git a/Framework/CurveFitting/test/FitPowderDiffPeaksTest.h b/Framework/CurveFitting/test/Algorithms/FitPowderDiffPeaksTest.h similarity index 99% rename from Framework/CurveFitting/test/FitPowderDiffPeaksTest.h rename to Framework/CurveFitting/test/Algorithms/FitPowderDiffPeaksTest.h index ffc3aa2b5be75b21602fda724cfd7ee954fd182e..2eea28afa5bc7c29710dadd82f362ece62d132fb 100644 --- a/Framework/CurveFitting/test/FitPowderDiffPeaksTest.h +++ b/Framework/CurveFitting/test/Algorithms/FitPowderDiffPeaksTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/FitPowderDiffPeaks.h" +#include "MantidCurveFitting/Algorithms/FitPowderDiffPeaks.h" #include "MantidDataHandling/LoadAscii.h" #include "MantidAPI/MatrixWorkspace.h" #include "MantidDataObjects/Workspace2D.h" @@ -11,7 +11,7 @@ #include "MantidAPI/TableRow.h" #include <fstream> -using Mantid::CurveFitting::FitPowderDiffPeaks; +using Mantid::CurveFitting::Algorithms::FitPowderDiffPeaks; using namespace std; using namespace Mantid; @@ -32,7 +32,7 @@ public: /** Test init */ void test_Init() { - CurveFitting::FitPowderDiffPeaks alg; + Algorithms::FitPowderDiffPeaks alg; TS_ASSERT_THROWS_NOTHING(alg.initialize()); TS_ASSERT(alg.isInitialized()); diff --git a/Framework/CurveFitting/test/FitTest.h b/Framework/CurveFitting/test/Algorithms/FitTest.h similarity index 98% rename from Framework/CurveFitting/test/FitTest.h rename to Framework/CurveFitting/test/Algorithms/FitTest.h index d4ce164b49008fd56dfc082016524bab1e9a7743..94b27088b284b5188b077158fe2d7ab871c110f7 100644 --- a/Framework/CurveFitting/test/FitTest.h +++ b/Framework/CurveFitting/test/Algorithms/FitTest.h @@ -7,11 +7,12 @@ #include "MantidAPI/FrameworkManager.h" #include "MantidAPI/IFuncMinimizer.h" #include "MantidAPI/FuncMinimizerFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "FitTestHelpers.h" using namespace Mantid; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::API; namespace { diff --git a/Framework/CurveFitting/test/FitTestHelpers.h b/Framework/CurveFitting/test/Algorithms/FitTestHelpers.h similarity index 100% rename from Framework/CurveFitting/test/FitTestHelpers.h rename to Framework/CurveFitting/test/Algorithms/FitTestHelpers.h diff --git a/Framework/CurveFitting/test/LeBailFitTest.h b/Framework/CurveFitting/test/Algorithms/LeBailFitTest.h similarity index 99% rename from Framework/CurveFitting/test/LeBailFitTest.h rename to Framework/CurveFitting/test/Algorithms/LeBailFitTest.h index 367da9173d58de7fbc930245072ebf27239bca6a..11d3e247d7c687a98620774c0459c4c97473d744 100644 --- a/Framework/CurveFitting/test/LeBailFitTest.h +++ b/Framework/CurveFitting/test/Algorithms/LeBailFitTest.h @@ -5,7 +5,7 @@ #include "MantidKernel/Timer.h" #include "MantidKernel/System.h" -#include "MantidCurveFitting/LeBailFit.h" +#include "MantidCurveFitting/Algorithms/LeBailFit.h" #include "MantidDataHandling/LoadAscii.h" #include <iostream> @@ -30,7 +30,7 @@ using namespace WorkspaceCreationHelper; using namespace std; -using Mantid::CurveFitting::LeBailFit; +using Mantid::CurveFitting::Algorithms::LeBailFit; class LeBailFitTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/LeBailFunctionTest.h b/Framework/CurveFitting/test/Algorithms/LeBailFunctionTest.h similarity index 99% rename from Framework/CurveFitting/test/LeBailFunctionTest.h rename to Framework/CurveFitting/test/Algorithms/LeBailFunctionTest.h index af5ecb5b30b30784720c1e4c0ce9945d0f35f34e..4bf04982b07c43c4d83f7aa7b7ebe621f5289421 100644 --- a/Framework/CurveFitting/test/LeBailFunctionTest.h +++ b/Framework/CurveFitting/test/Algorithms/LeBailFunctionTest.h @@ -9,10 +9,11 @@ #include <iomanip> #include <fstream> -#include "MantidCurveFitting/LeBailFunction.h" +#include "MantidCurveFitting/Algorithms/LeBailFunction.h" using namespace Mantid; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::API; using namespace std; diff --git a/Framework/CurveFitting/test/NormaliseByPeakAreaTest.h b/Framework/CurveFitting/test/Algorithms/NormaliseByPeakAreaTest.h similarity index 98% rename from Framework/CurveFitting/test/NormaliseByPeakAreaTest.h rename to Framework/CurveFitting/test/Algorithms/NormaliseByPeakAreaTest.h index 17dd123a735af14c7e9a97e3882abe5ddd5a30f1..30d27a5a9b32834fae81aba7fc65f4d3fd6e56a3 100644 --- a/Framework/CurveFitting/test/NormaliseByPeakAreaTest.h +++ b/Framework/CurveFitting/test/Algorithms/NormaliseByPeakAreaTest.h @@ -3,10 +3,10 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/NormaliseByPeakArea.h" -#include "Functions/ComptonProfileTestHelpers.h" +#include "MantidCurveFitting/Algorithms/NormaliseByPeakArea.h" +#include "../Functions/ComptonProfileTestHelpers.h" -using Mantid::CurveFitting::NormaliseByPeakArea; +using Mantid::CurveFitting::Algorithms::NormaliseByPeakArea; class NormaliseByPeakAreaTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/PawleyFitTest.h b/Framework/CurveFitting/test/Algorithms/PawleyFitTest.h similarity index 98% rename from Framework/CurveFitting/test/PawleyFitTest.h rename to Framework/CurveFitting/test/Algorithms/PawleyFitTest.h index 3c99605f3d889689ca20cd3a8f375a4c09f0a93f..1766df896cd2ddba7d2486f7210f2496a25dd0fd 100644 --- a/Framework/CurveFitting/test/PawleyFitTest.h +++ b/Framework/CurveFitting/test/Algorithms/PawleyFitTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/PawleyFit.h" +#include "MantidCurveFitting/Algorithms/PawleyFit.h" #include "MantidAPI/AlgorithmManager.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/TableRow.h" @@ -11,8 +11,8 @@ #include "MantidKernel/V3D.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" -using Mantid::CurveFitting::PawleyFit; -using Mantid::CurveFitting::V3DFromHKLColumnExtractor; +using Mantid::CurveFitting::Algorithms::PawleyFit; +using Mantid::CurveFitting::Algorithms::V3DFromHKLColumnExtractor; using namespace Mantid::API; using namespace Mantid::Kernel; diff --git a/Framework/CurveFitting/test/PlotPeakByLogValueTest.h b/Framework/CurveFitting/test/Algorithms/PlotPeakByLogValueTest.h similarity index 99% rename from Framework/CurveFitting/test/PlotPeakByLogValueTest.h rename to Framework/CurveFitting/test/Algorithms/PlotPeakByLogValueTest.h index 03947a4ae12f68f9ef830eeab19346b35e5fa4f7..9fb02f3eff1711f19136fd8add1b58a3658e50b4 100644 --- a/Framework/CurveFitting/test/PlotPeakByLogValueTest.h +++ b/Framework/CurveFitting/test/Algorithms/PlotPeakByLogValueTest.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/PlotPeakByLogValue.h" +#include "MantidCurveFitting/Algorithms/PlotPeakByLogValue.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidAPI/TableRow.h" @@ -26,6 +26,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::DataObjects; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; typedef Mantid::DataObjects::Workspace2D_sptr WS_type; typedef Mantid::DataObjects::TableWorkspace_sptr TWS_type; diff --git a/Framework/CurveFitting/test/RefinePowderInstrumentParameters3Test.h b/Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParameters3Test.h similarity index 99% rename from Framework/CurveFitting/test/RefinePowderInstrumentParameters3Test.h rename to Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParameters3Test.h index a77678e9ebccb2dae4462d4d8d0611b4fc1c4f26..dedf1a1c02d6251cc27152f26dde9d4820c39563 100644 --- a/Framework/CurveFitting/test/RefinePowderInstrumentParameters3Test.h +++ b/Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParameters3Test.h @@ -3,7 +3,7 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/RefinePowderInstrumentParameters3.h" +#include "MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters3.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidDataObjects/Workspace2D.h" @@ -12,7 +12,7 @@ #include <fstream> -using Mantid::CurveFitting::RefinePowderInstrumentParameters3; +using Mantid::CurveFitting::Algorithms::RefinePowderInstrumentParameters3; using namespace Mantid; using namespace Mantid::DataObjects; diff --git a/Framework/CurveFitting/test/RefinePowderInstrumentParametersTest.h b/Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParametersTest.h similarity index 98% rename from Framework/CurveFitting/test/RefinePowderInstrumentParametersTest.h rename to Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParametersTest.h index 421e4728d18724aff5a18509d3079997d7af5c81..fccdacb20db30175b3a3fa7c457b9ca9d9cbff43 100644 --- a/Framework/CurveFitting/test/RefinePowderInstrumentParametersTest.h +++ b/Framework/CurveFitting/test/Algorithms/RefinePowderInstrumentParametersTest.h @@ -3,14 +3,14 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/RefinePowderInstrumentParameters.h" +#include "MantidCurveFitting/Algorithms/RefinePowderInstrumentParameters.h" #include "MantidAPI/MatrixWorkspace.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidAPI/TableRow.h" #include <fstream> -using Mantid::CurveFitting::RefinePowderInstrumentParameters; +using Mantid::CurveFitting::Algorithms::RefinePowderInstrumentParameters; using namespace Mantid; using namespace Mantid::Kernel; using namespace Mantid::API; @@ -153,7 +153,7 @@ public: geomparamws); // 2. Set up algorithm parameters - CurveFitting::RefinePowderInstrumentParameters alg; + RefinePowderInstrumentParameters alg; TS_ASSERT_THROWS_NOTHING(alg.initialize()); TS_ASSERT(alg.isInitialized()); @@ -236,7 +236,7 @@ public: geomparamws); // 2. Set up algorithm parameters - CurveFitting::RefinePowderInstrumentParameters alg; + RefinePowderInstrumentParameters alg; TS_ASSERT_THROWS_NOTHING(alg.initialize()); TS_ASSERT(alg.isInitialized()); diff --git a/Framework/CurveFitting/test/SeqDomainSpectrumCreatorTest.h b/Framework/CurveFitting/test/Algorithms/SeqDomainSpectrumCreatorTest.h similarity index 99% rename from Framework/CurveFitting/test/SeqDomainSpectrumCreatorTest.h rename to Framework/CurveFitting/test/Algorithms/SeqDomainSpectrumCreatorTest.h index 4cf5c605467e89f40040a1d00da1b3cea7d9b196..077ca4fd6b7d0e7eaf1743731055c1fa0de27f03 100644 --- a/Framework/CurveFitting/test/SeqDomainSpectrumCreatorTest.h +++ b/Framework/CurveFitting/test/Algorithms/SeqDomainSpectrumCreatorTest.h @@ -10,7 +10,7 @@ #include "MantidAPI/IFunction1DSpectrum.h" #include "MantidAPI/ParamFunction.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/TableRow.h" #include "MantidAPI/FunctionFactory.h" @@ -20,6 +20,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; class SeqDomainSpectrumCreatorTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/SplineBackgroundTest.h b/Framework/CurveFitting/test/Algorithms/SplineBackgroundTest.h similarity index 96% rename from Framework/CurveFitting/test/SplineBackgroundTest.h rename to Framework/CurveFitting/test/Algorithms/SplineBackgroundTest.h index 935ed917426390465f5b952deb4f385aba20c967..4608bff0880d02351a3143f238691427d8a7896f 100644 --- a/Framework/CurveFitting/test/SplineBackgroundTest.h +++ b/Framework/CurveFitting/test/Algorithms/SplineBackgroundTest.h @@ -2,7 +2,7 @@ #define SPLINEBACKGROUNDTEST_H_ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/SplineBackground.h" +#include "MantidCurveFitting/Algorithms/SplineBackground.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/FrameworkManager.h" #include "MantidAPI/MatrixWorkspace.h" diff --git a/Framework/CurveFitting/test/SplineInterpolationTest.h b/Framework/CurveFitting/test/Algorithms/SplineInterpolationTest.h similarity index 97% rename from Framework/CurveFitting/test/SplineInterpolationTest.h rename to Framework/CurveFitting/test/Algorithms/SplineInterpolationTest.h index 43b5adc90e74c081932edbe431ce6a50dcd11081..e55dc97c987ca523d7b8ac445a20e1c9ea1e0f2e 100644 --- a/Framework/CurveFitting/test/SplineInterpolationTest.h +++ b/Framework/CurveFitting/test/Algorithms/SplineInterpolationTest.h @@ -3,12 +3,12 @@ #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/SplineInterpolation.h" +#include "MantidCurveFitting/Algorithms/SplineInterpolation.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" #include "MantidAPI/NumericAxis.h" #include "MantidAPI/TextAxis.h" -using Mantid::CurveFitting::SplineInterpolation; +using Mantid::CurveFitting::Algorithms::SplineInterpolation; using namespace Mantid::API; class SplineInterpolationTest : public CxxTest::TestSuite { diff --git a/Framework/CurveFitting/test/SplineSmoothingTest.h b/Framework/CurveFitting/test/Algorithms/SplineSmoothingTest.h similarity index 96% rename from Framework/CurveFitting/test/SplineSmoothingTest.h rename to Framework/CurveFitting/test/Algorithms/SplineSmoothingTest.h index cc28ba8c4361c88f6d91c53231d3120d033fdc9b..bc88af1750e9c0de3be3a6940fd5c9667859b100 100644 --- a/Framework/CurveFitting/test/SplineSmoothingTest.h +++ b/Framework/CurveFitting/test/Algorithms/SplineSmoothingTest.h @@ -4,9 +4,9 @@ #include <cxxtest/TestSuite.h> #include "MantidTestHelpers/WorkspaceCreationHelper.h" -#include "MantidCurveFitting/SplineSmoothing.h" +#include "MantidCurveFitting/Algorithms/SplineSmoothing.h" -using Mantid::CurveFitting::SplineSmoothing; +using Mantid::CurveFitting::Algorithms::SplineSmoothing; class SplineSmoothingTest : public CxxTest::TestSuite { public: diff --git a/Framework/CurveFitting/test/CompositeFunctionTest.h b/Framework/CurveFitting/test/CompositeFunctionTest.h index 2c9a053c3a8f3531fd236a9860f09b50c99e0935..62a5cc3a1e5a15205b4504fafbb040b3f1543b75 100644 --- a/Framework/CurveFitting/test/CompositeFunctionTest.h +++ b/Framework/CurveFitting/test/CompositeFunctionTest.h @@ -5,7 +5,7 @@ #include "MantidAPI/IPeakFunction.h" #include "MantidAPI/CompositeFunction.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidAPI/TableRow.h" @@ -28,6 +28,7 @@ using namespace Mantid::API; using namespace Mantid::DataObjects; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::CurveFitting::FuncMinimisers; using namespace Mantid::CurveFitting::CostFunctions; diff --git a/Framework/CurveFitting/test/FitMWTest.h b/Framework/CurveFitting/test/FitMWTest.h index 3065472ccea415a7b29542eb97b73f08667d66b0..00f938a976097564634c962ab59e1d74bf45e6a0 100644 --- a/Framework/CurveFitting/test/FitMWTest.h +++ b/Framework/CurveFitting/test/FitMWTest.h @@ -5,7 +5,7 @@ #include "MantidTestHelpers/FakeObjects.h" #include "MantidCurveFitting/FitMW.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/SeqDomain.h" #include "MantidCurveFitting/Functions/UserFunction.h" #include "MantidCurveFitting/Functions/ExpDecay.h" @@ -29,6 +29,7 @@ using namespace Mantid; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::API; @@ -52,7 +53,7 @@ public: fun->setParameter("Height", 1.); fun->setParameter("Lifetime", 1.0); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setProperty("Function", fun); @@ -160,7 +161,7 @@ public: fun->setParameter("Height", 1.); fun->setParameter("Lifetime", 1.); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setProperty("Function", fun); diff --git a/Framework/CurveFitting/test/FuncMinimizers/FABADAMinimizerTest.h b/Framework/CurveFitting/test/FuncMinimizers/FABADAMinimizerTest.h index cd59c1aef2784e7b0ee96585d1301f600602ca3c..73f6508f42790dfc83079c5dcf4796ff14c0bf6b 100644 --- a/Framework/CurveFitting/test/FuncMinimizers/FABADAMinimizerTest.h +++ b/Framework/CurveFitting/test/FuncMinimizers/FABADAMinimizerTest.h @@ -5,7 +5,7 @@ #include "MantidCurveFitting/FuncMinimizers/FABADAMinimizer.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/AlgorithmManager.h" #include "MantidCurveFitting/Functions/ExpDecay.h" @@ -17,6 +17,7 @@ using Mantid::CurveFitting::FuncMinimisers::FABADAMinimizer; using namespace Mantid::API; using namespace Mantid; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; class FABADAMinimizerTest : public CxxTest::TestSuite { @@ -35,7 +36,7 @@ public: fun->setParameter("Height", 8.); fun->setParameter("Lifetime", 1.0); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setRethrows(true); @@ -144,7 +145,7 @@ public: fun->setParameter("Height", 1.); fun->setParameter("Lifetime", 1.0); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setRethrows(true); diff --git a/Framework/CurveFitting/test/FunctionParameterDecoratorFitTest.h b/Framework/CurveFitting/test/FunctionParameterDecoratorFitTest.h index c7f60ebf936da427adc02bfe5a1b4a01c6b27288..699b840af67808e1503a8155ce93469c96282a33 100644 --- a/Framework/CurveFitting/test/FunctionParameterDecoratorFitTest.h +++ b/Framework/CurveFitting/test/FunctionParameterDecoratorFitTest.h @@ -9,13 +9,14 @@ #include "MantidAPI/FunctionParameterDecorator.h" #include "MantidDataObjects/Workspace2D.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include <boost/make_shared.hpp> using namespace Mantid::API; using namespace Mantid::DataObjects; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; class FunctionParameterDecoratorFitTest; diff --git a/Framework/CurveFitting/test/Functions/AbragamTest.h b/Framework/CurveFitting/test/Functions/AbragamTest.h index d103dfa360ed57fc1a60f7a2e8a8f357c79f71dc..387926477b7d2f73b443265d2ce80dfafbcd571c 100644 --- a/Framework/CurveFitting/test/Functions/AbragamTest.h +++ b/Framework/CurveFitting/test/Functions/AbragamTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -19,6 +19,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::DataObjects; @@ -55,7 +56,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/Bk2BkExpConvPVTest.h b/Framework/CurveFitting/test/Functions/Bk2BkExpConvPVTest.h index 81556c847a00fc414983dba7725560e189bae462..b7630e0f6b828d287e4d54f79f4918d6adb5f446 100644 --- a/Framework/CurveFitting/test/Functions/Bk2BkExpConvPVTest.h +++ b/Framework/CurveFitting/test/Functions/Bk2BkExpConvPVTest.h @@ -9,12 +9,13 @@ #include <fstream> #include "MantidCurveFitting/Functions/Bk2BkExpConvPV.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidDataObjects/Workspace2D.h" using namespace Mantid; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::API; @@ -159,7 +160,7 @@ public: << std::endl; // 3. Set fit - Fit fitalg; + Algorithms::Fit fitalg; fitalg.initialize(); TS_ASSERT(fitalg.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/ChebyshevTest.h b/Framework/CurveFitting/test/Functions/ChebyshevTest.h index 1e348c7bc88fc44df8b65a291786fa8493a3589a..2602cc30011f506b35969d80ec4fbc5d25a0265a 100644 --- a/Framework/CurveFitting/test/Functions/ChebyshevTest.h +++ b/Framework/CurveFitting/test/Functions/ChebyshevTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/Chebyshev.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/AnalysisDataService.h" @@ -14,6 +14,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; class ChebyshevTest : public CxxTest::TestSuite { @@ -60,7 +61,7 @@ public: Chebyshev cheb; cheb.setAttributeValue("n", 3); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setPropertyValue("Function", cheb.asString()); @@ -117,7 +118,7 @@ public: cheb.setAttributeValue("StartX", -10.0); cheb.setAttributeValue("EndX", 10.0); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setPropertyValue("Function", cheb.asString()); diff --git a/Framework/CurveFitting/test/Functions/ConvolutionTest.h b/Framework/CurveFitting/test/Functions/ConvolutionTest.h index e7ee0eecece7cb0bf5802852ad223687774ab367..21c97b9b390e28361bbb123333158d45c82abf6d 100644 --- a/Framework/CurveFitting/test/Functions/ConvolutionTest.h +++ b/Framework/CurveFitting/test/Functions/ConvolutionTest.h @@ -6,7 +6,7 @@ #include "MantidAPI/FrameworkManager.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidCurveFitting/Functions/Convolution.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidDataObjects/TableWorkspace.h" #include "MantidAPI/IPeakFunction.h" @@ -21,6 +21,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::DataObjects; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; typedef Mantid::DataObjects::Workspace2D_sptr WS_type; @@ -407,7 +408,7 @@ public: conv->setParameter("f1.h", 1); conv->setParameter("f1.w", 1); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setPropertyValue("Function", conv->asString()); @@ -425,7 +426,7 @@ public: 0.1, fabs(out->getParameter("f1.w") - conv->getParameter("f1.w"))); conv->setAttributeValue("FixResolution", false); - Fit fit1; + Algorithms::Fit fit1; fit1.initialize(); fit1.setProperty("Function", boost::dynamic_pointer_cast<IFunction>(conv)); fit1.setProperty("InputWorkspace", data); diff --git a/Framework/CurveFitting/test/Functions/CubicSplineTest.h b/Framework/CurveFitting/test/Functions/CubicSplineTest.h index fd9c1d3231c5032d9cd08884e79ab564c7077190..06760532f47b8102eb8b600f9ea1452adccad021 100644 --- a/Framework/CurveFitting/test/Functions/CubicSplineTest.h +++ b/Framework/CurveFitting/test/Functions/CubicSplineTest.h @@ -7,7 +7,7 @@ #include <iostream> #include "MantidCurveFitting/Functions/CubicSpline.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/AnalysisDataService.h" @@ -17,6 +17,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; class CubicSplineTest : public CxxTest::TestSuite { diff --git a/Framework/CurveFitting/test/Functions/DeltaFunctionTest.h b/Framework/CurveFitting/test/Functions/DeltaFunctionTest.h index a29e7043d8bc66f6e1742cc596f0bdf3c7f7cb02..b7fabe94be69f939f9593a29ee64bf745353847f 100644 --- a/Framework/CurveFitting/test/Functions/DeltaFunctionTest.h +++ b/Framework/CurveFitting/test/Functions/DeltaFunctionTest.h @@ -2,7 +2,7 @@ #define DELTAFUNCTIONTEST_H #include <cxxtest/TestSuite.h> -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/Functions/DeltaFunction.h" #include "MantidCurveFitting/Functions/Convolution.h" @@ -13,6 +13,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; // same class as ConvolutionTest_Gauss in ConvolutionTest.h diff --git a/Framework/CurveFitting/test/Functions/DiffRotDiscreteCircleTest.h b/Framework/CurveFitting/test/Functions/DiffRotDiscreteCircleTest.h index 98bcc699040cbee4b48c3b843d4e46fca5f97490..a2ecbc07f71e0ee28f673d62749cb85cb01eb68e 100644 --- a/Framework/CurveFitting/test/Functions/DiffRotDiscreteCircleTest.h +++ b/Framework/CurveFitting/test/Functions/DiffRotDiscreteCircleTest.h @@ -6,7 +6,7 @@ #include "MantidCurveFitting/Functions/Convolution.h" #include "MantidCurveFitting/Functions/DiffRotDiscreteCircle.h" #include "MantidCurveFitting/Functions/Gaussian.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidGeometry/Instrument/ReferenceFrame.h" #include "MantidTestHelpers/ComponentCreationHelper.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" @@ -19,6 +19,7 @@ #include <boost/shared_ptr.hpp> using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; class DiffRotDiscreteCircleTest : public CxxTest::TestSuite { @@ -127,7 +128,7 @@ public: "9,Intensity=2.9,Radius=2.3,Decay=0.468"; // Do a fit with no iterations - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); fitalg.setProperty("Function", funtion_string); @@ -247,7 +248,7 @@ public: "Radius=1.567,Decay=7.567))"; // Initialize the fit function in the Fit algorithm - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); fitalg.setProperty("Function", funtion_string); @@ -345,7 +346,7 @@ private: << ",Shift=" << S << ")"; // Initialize the fit function in the Fit algorithm - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); fitalg.setProperty("Function", function_stream.str()); @@ -528,7 +529,7 @@ private: // create a data workspace using a Fit algorithm Mantid::DataObjects::Workspace2D_sptr - generateWorkspaceFromFitAlgorithm(Fit &fitalg) { + generateWorkspaceFromFitAlgorithm(Algorithms::Fit &fitalg) { using namespace Mantid::Kernel; using namespace Mantid::Geometry; diff --git a/Framework/CurveFitting/test/Functions/DiffSphereTest.h b/Framework/CurveFitting/test/Functions/DiffSphereTest.h index 9a77f604da6244c4eb6a116785ffd94066352ebf..10cbffce46ff56c78913de7d9546ad77ecd7b202 100644 --- a/Framework/CurveFitting/test/Functions/DiffSphereTest.h +++ b/Framework/CurveFitting/test/Functions/DiffSphereTest.h @@ -15,7 +15,7 @@ #include "MantidCurveFitting/Functions/Gaussian.h" #include "MantidCurveFitting/Functions/Convolution.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/FunctionFactory.h" #include "MantidAPI/AlgorithmFactory.h" @@ -23,6 +23,7 @@ #include "MantidTestHelpers/ComponentCreationHelper.h" using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; class DiffSphereTest : public CxxTest::TestSuite { @@ -46,7 +47,7 @@ public: "Sigma=0.002);name=ElasticDiffSphere,Q=0.5,Height=47.014,Radius=3.567)"; // Initialize the fit function in the Fit algorithm - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); fitalg.setProperty("Function", funtion_string); @@ -189,7 +190,7 @@ public: const double Q(0.5); // Initialize the fit function in the Fit algorithm - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); std::ostringstream funtion_stream; @@ -335,7 +336,7 @@ private: simQ = 0.20092; // Initialize the fit function in the Fit algorithm - Fit fitalg; + Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); std::ostringstream funtion_stream; @@ -461,7 +462,7 @@ private: // create a data workspace using a Fit algorithm Mantid::DataObjects::Workspace2D_sptr - generateWorkspaceFromFitAlgorithm(Fit &fitalg) { + generateWorkspaceFromFitAlgorithm(Algorithms::Fit &fitalg) { using namespace Mantid::Kernel; using namespace Mantid::Geometry; diff --git a/Framework/CurveFitting/test/Functions/EndErfcTest.h b/Framework/CurveFitting/test/Functions/EndErfcTest.h index 5fe20acfd8e99905c50aca1c74e0ba9a838b2b9e..dc03dd49687bc3504fa6fede22461e39bd487145 100644 --- a/Framework/CurveFitting/test/Functions/EndErfcTest.h +++ b/Framework/CurveFitting/test/Functions/EndErfcTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/EndErfc.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidDataObjects/Workspace2D.h" @@ -14,6 +14,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class EndErfcTest : public CxxTest::TestSuite { @@ -39,7 +40,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/ExpDecayMuonTest.h b/Framework/CurveFitting/test/Functions/ExpDecayMuonTest.h index 45561fcc3d1326c35d87105e6098aa05f29da5df..02a079776da1b8fc1632ca1ddc4e09cd632bcaff 100644 --- a/Framework/CurveFitting/test/Functions/ExpDecayMuonTest.h +++ b/Framework/CurveFitting/test/Functions/ExpDecayMuonTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" #include "MantidDataObjects/Workspace2D.h" @@ -16,6 +16,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::DataObjects; @@ -49,7 +50,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/ExpDecayOscTest.h b/Framework/CurveFitting/test/Functions/ExpDecayOscTest.h index cc87d09f6b5b2908c3407d53d9be690c3c6f70a9..9c91b5e7dccd6734f9deb754062e9da48fcc81a9 100644 --- a/Framework/CurveFitting/test/Functions/ExpDecayOscTest.h +++ b/Framework/CurveFitting/test/Functions/ExpDecayOscTest.h @@ -5,7 +5,7 @@ #include <cmath> #include "MantidCurveFitting/Functions/ExpDecayOsc.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -14,6 +14,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::CurveFitting::Constraints; using namespace Mantid::DataObjects; @@ -50,7 +51,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/ExpDecayTest.h b/Framework/CurveFitting/test/Functions/ExpDecayTest.h index e5b3ff434c8b850ec7e7f672e50f2ed5286c9443..149edd05e1a5ba33f31244e8764be4b53a4c5692 100644 --- a/Framework/CurveFitting/test/Functions/ExpDecayTest.h +++ b/Framework/CurveFitting/test/Functions/ExpDecayTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -19,6 +19,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::DataObjects; @@ -52,7 +53,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/FullprofPolynomialTest.h b/Framework/CurveFitting/test/Functions/FullprofPolynomialTest.h index fc6b72a1cbc80a725ee453cdf0c1927ecf0ae340..42b9226a157d35194382d641ca202f57561deb76 100644 --- a/Framework/CurveFitting/test/Functions/FullprofPolynomialTest.h +++ b/Framework/CurveFitting/test/Functions/FullprofPolynomialTest.h @@ -6,7 +6,7 @@ #include "MantidCurveFitting/Functions/FullprofPolynomial.h" #include "MantidAPI/IFunction.h" #include "MantidAPI/WorkspaceFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" using Mantid::CurveFitting::Functions::FullprofPolynomial; @@ -14,6 +14,7 @@ using Mantid::CurveFitting::Functions::FullprofPolynomial; using namespace Mantid; using namespace Mantid::API; using namespace Mantid::CurveFitting; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::DataObjects; using namespace Mantid::Kernel; @@ -88,7 +89,7 @@ public: tofbkgd->setParameter("A3", 0.0); // Set up fit - CurveFitting::Fit fitalg; + CurveFitting::Algorithms::Fit fitalg; TS_ASSERT_THROWS_NOTHING(fitalg.initialize()); TS_ASSERT(fitalg.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/GausDecayTest.h b/Framework/CurveFitting/test/Functions/GausDecayTest.h index 59df2188d75dd290dbac76646fd153cb545aa4e5..3771d22c694d4c4438d2c3681fb7435e5dc634ac 100644 --- a/Framework/CurveFitting/test/Functions/GausDecayTest.h +++ b/Framework/CurveFitting/test/Functions/GausDecayTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -22,6 +22,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; using namespace Mantid::DataHandling; @@ -53,7 +54,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/GausOscTest.h b/Framework/CurveFitting/test/Functions/GausOscTest.h index fdd9b91bf366267ffbed186e20b18b338c34f16d..0e31dc9c702bb0f9a5499f3a7ffcceaf22dd8d86 100644 --- a/Framework/CurveFitting/test/Functions/GausOscTest.h +++ b/Framework/CurveFitting/test/Functions/GausOscTest.h @@ -8,7 +8,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -23,6 +23,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; using namespace Mantid::DataHandling; @@ -58,7 +59,7 @@ public: void testAgainstMockData() // Parts of test disabled because it does not give // result like that obtained in mantidplot. { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/GaussianTest.h b/Framework/CurveFitting/test/Functions/GaussianTest.h index 79c76ab0836973c8c75803cabf7a0dfe36be9d1b..079292914546c5b19922438bcc98aab4ab79b476 100644 --- a/Framework/CurveFitting/test/Functions/GaussianTest.h +++ b/Framework/CurveFitting/test/Functions/GaussianTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/Gaussian.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" #include "MantidKernel/UnitFactory.h" @@ -34,6 +34,7 @@ using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; using namespace Mantid::CurveFitting::CostFunctions; using namespace Mantid::CurveFitting::Constraints; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; using namespace Mantid::DataHandling; @@ -239,7 +240,7 @@ public: TS_ASSERT_THROWS_NOTHING(AnalysisDataService::Instance().add(wsName, ws2D)); // Initialise algorithm - Fit alg; + Algorithms::Fit alg; TS_ASSERT_THROWS_NOTHING(alg.initialize()); TS_ASSERT(alg.isInitialized()); @@ -308,7 +309,7 @@ public: Mantid::MantidVec &e = ws2D->dataE(0); // error values of counts getMockData(y, e); - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); @@ -361,7 +362,7 @@ public: // put this workspace in the data service TS_ASSERT_THROWS_NOTHING(AnalysisDataService::Instance().add(wsName, ws2D)); - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); @@ -427,7 +428,7 @@ public: ConfigService::Instance().getString("curvefitting.peakRadius"); ConfigService::Instance().setString("curvefitting.peakRadius", "5"); - Fit alg; + Algorithms::Fit alg; TS_ASSERT_THROWS_NOTHING(alg.initialize()); TS_ASSERT(alg.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/IkedaCarpenterPVTest.h b/Framework/CurveFitting/test/Functions/IkedaCarpenterPVTest.h index 0d6464341d4cdc160bf5bed22e22f02ba7ad25aa..b374956ec0367e0e261eb339d11c7bc123b41725 100644 --- a/Framework/CurveFitting/test/Functions/IkedaCarpenterPVTest.h +++ b/Framework/CurveFitting/test/Functions/IkedaCarpenterPVTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/IkedaCarpenterPV.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/ConfigService.h" #include "MantidTestHelpers/WorkspaceCreationHelper.h" @@ -268,7 +268,7 @@ using namespace Mantid::CurveFitting::Functions; icpv.tie("Kappa", "46.025921"); icpv.setParameter("X0", 45.0); - auto alg = boost::shared_ptr<IAlgorithm>(new Fit); + auto alg = boost::shared_ptr<IAlgorithm>(new Algorithms::Fit); alg->initialize(); alg->setPropertyValue("Function", icpv.asString()); // Set general Fit parameters diff --git a/Framework/CurveFitting/test/Functions/LinearBackgroundTest.h b/Framework/CurveFitting/test/Functions/LinearBackgroundTest.h index 8e8905a7f8619c0202e97b49519faf5d229179ba..03f2d8341c2adbb05608afa567f854141bc8298d 100644 --- a/Framework/CurveFitting/test/Functions/LinearBackgroundTest.h +++ b/Framework/CurveFitting/test/Functions/LinearBackgroundTest.h @@ -5,7 +5,7 @@ #include "MantidCurveFitting/Functions/LinearBackground.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -18,7 +18,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using Mantid::CurveFitting::Functions::LinearBackground; -using Mantid::CurveFitting::Fit; +using Mantid::CurveFitting::Algorithms::Fit; using namespace Mantid::DataObjects; using namespace Mantid::DataHandling; diff --git a/Framework/CurveFitting/test/Functions/LogNormalTest.h b/Framework/CurveFitting/test/Functions/LogNormalTest.h index de8055bfb53da1d2a85cced1b8c7fd8c56b8d0ff..d4391f687f2020a2aab3d304feae0ad7e181ec74 100644 --- a/Framework/CurveFitting/test/Functions/LogNormalTest.h +++ b/Framework/CurveFitting/test/Functions/LogNormalTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -20,6 +20,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class LogNormalTest : public CxxTest::TestSuite { @@ -55,7 +56,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/MuonFInteractionTest.h b/Framework/CurveFitting/test/Functions/MuonFInteractionTest.h index 3e3e3ac7b52e9a102648c843b693de72215aba0e..a03d49a13135f5697a6f46e2ca9d2a8a2c067e89 100644 --- a/Framework/CurveFitting/test/Functions/MuonFInteractionTest.h +++ b/Framework/CurveFitting/test/Functions/MuonFInteractionTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/MuonFInteraction.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -17,6 +17,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class MuonFInteractionTest : public CxxTest::TestSuite { @@ -52,7 +53,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/PolynomialTest.h b/Framework/CurveFitting/test/Functions/PolynomialTest.h index 8af4cebb7efd4bfc57e5661c5c2adae7242276bd..13d0461f676997d8bc7ccc44f69831644154cb02 100644 --- a/Framework/CurveFitting/test/Functions/PolynomialTest.h +++ b/Framework/CurveFitting/test/Functions/PolynomialTest.h @@ -6,12 +6,13 @@ #include "MantidCurveFitting/Functions/Polynomial.h" #include "MantidDataObjects/Workspace2D.h" #include "MantidAPI/WorkspaceFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" using Mantid::CurveFitting::Functions::Polynomial; using namespace Mantid; using namespace API; using namespace Kernel; +using namespace Mantid::CurveFitting::Algorithms; class PolynomialTest : public CxxTest::TestSuite { public: @@ -45,7 +46,7 @@ public: // put this workspace in the data service TS_ASSERT_THROWS_NOTHING(AnalysisDataService::Instance().add(wsName, ws2D)); - CurveFitting::Fit alg2; + CurveFitting::Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/ProductFunctionTest.h b/Framework/CurveFitting/test/Functions/ProductFunctionTest.h index a87ac08200116c8bd30cb91f58a24617447a7014..41e6db65efb256ef9c3fe212ea1df61855331a0d 100644 --- a/Framework/CurveFitting/test/Functions/ProductFunctionTest.h +++ b/Framework/CurveFitting/test/Functions/ProductFunctionTest.h @@ -6,7 +6,7 @@ #include "MantidCurveFitting/Functions/ProductFunction.h" #include "MantidCurveFitting/Functions/Gaussian.h" #include "MantidCurveFitting/Jacobian.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" @@ -21,6 +21,7 @@ typedef Mantid::DataObjects::Workspace2D_sptr WS_type; using Mantid::CurveFitting::Functions::ProductFunction; using Mantid::CurveFitting::Functions::Gaussian; +using Mantid::CurveFitting::Algorithms::Fit; class ProductFunctionMWTest_Gauss : public Mantid::API::IPeakFunction { public: @@ -251,7 +252,7 @@ public: Mantid::API::AnalysisDataService::Instance().add(wsName, ws); - Mantid::CurveFitting::Fit fit; + Mantid::CurveFitting::Algorithms::Fit fit; fit.initialize(); f0->tie("PeakCentre", "1.0"); diff --git a/Framework/CurveFitting/test/Functions/QuadraticTest.h b/Framework/CurveFitting/test/Functions/QuadraticTest.h index 72836c16fd7941f93f56fe450dad840c475cd922..293b34a479a774bb824a08c6e21c509b25d17a39 100644 --- a/Framework/CurveFitting/test/Functions/QuadraticTest.h +++ b/Framework/CurveFitting/test/Functions/QuadraticTest.h @@ -5,7 +5,7 @@ #include "MantidCurveFitting/Functions/Quadratic.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -18,7 +18,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using Mantid::CurveFitting::Functions::Quadratic; -using Mantid::CurveFitting::Fit; +using Mantid::CurveFitting::Algorithms::Fit; using namespace Mantid::DataObjects; using namespace Mantid::DataHandling; diff --git a/Framework/CurveFitting/test/Functions/ResolutionTest.h b/Framework/CurveFitting/test/Functions/ResolutionTest.h index c4adc4e2e5e2d0287d1b9154411c2321cfb350f7..7ac7e7a642c912f6a0cd301f390f0908b776dedb 100644 --- a/Framework/CurveFitting/test/Functions/ResolutionTest.h +++ b/Framework/CurveFitting/test/Functions/ResolutionTest.h @@ -4,7 +4,7 @@ #include <cxxtest/TestSuite.h> #include "MantidCurveFitting/Functions/Resolution.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidCurveFitting/Functions/Convolution.h" #include "MantidAPI/IPeakFunction.h" #include "MantidAPI/FunctionFactory.h" @@ -170,7 +170,7 @@ public: conv.addFunction(res); conv.addFunction(gauss); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setPropertyValue("Function", conv.asString()); fit.setPropertyValue("InputWorkspace", "ResolutionTest_WS"); diff --git a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTest.h b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTest.h index 7cf2b5b478e3392952dd6509d35570141cf118ad..75aabd12039f6c9253ca7a6683e7352c39939be0 100644 --- a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTest.h +++ b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -51,7 +51,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesExpDecayTest.h b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesExpDecayTest.h index a47df64ce636ec46085e801ff38855cc3b3b2405..41872069e5d1ce649428af575ca217ba8050f801 100644 --- a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesExpDecayTest.h +++ b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesExpDecayTest.h @@ -5,7 +5,7 @@ #include "MantidCurveFitting/Functions/StaticKuboToyabeTimesExpDecay.h" #include "MantidAPI/FunctionFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" using Mantid::CurveFitting::Functions::StaticKuboToyabeTimesExpDecay; @@ -14,6 +14,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class StaticKuboToyabeTimesExpDecayTest : public CxxTest::TestSuite { @@ -70,7 +71,7 @@ public: } void test_AgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesGausDecayTest.h b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesGausDecayTest.h index 74ad5d74c8cf72012da223bb042be8a49a4ef93a..f257182091434c6f21ab1bac0b9c17afa3e90b29 100644 --- a/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesGausDecayTest.h +++ b/Framework/CurveFitting/test/Functions/StaticKuboToyabeTimesGausDecayTest.h @@ -5,7 +5,7 @@ #include "MantidCurveFitting/Functions/StaticKuboToyabeTimesGausDecay.h" #include "MantidAPI/FunctionFactory.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidDataObjects/Workspace2D.h" using Mantid::CurveFitting::Functions::StaticKuboToyabeTimesGausDecay; @@ -13,6 +13,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class StaticKuboToyabeTimesGausDecayTest : public CxxTest::TestSuite { @@ -69,7 +70,7 @@ public: } void test_AgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/StretchExpMuonTest.h b/Framework/CurveFitting/test/Functions/StretchExpMuonTest.h index 47c85a7e6818fc8e56a4019299147d47252253c4..8bbbfb9041cd005233bdd865d79009bcdcb0f444 100644 --- a/Framework/CurveFitting/test/Functions/StretchExpMuonTest.h +++ b/Framework/CurveFitting/test/Functions/StretchExpMuonTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -20,6 +20,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class StretchExpMuonTest : public CxxTest::TestSuite { @@ -55,7 +56,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/Functions/StretchExpTest.h b/Framework/CurveFitting/test/Functions/StretchExpTest.h index b90876d0e5be6b387c2d839a7adf6452763efb06..a17208356f7b9261d4ab4551706426a3fe683297 100644 --- a/Framework/CurveFitting/test/Functions/StretchExpTest.h +++ b/Framework/CurveFitting/test/Functions/StretchExpTest.h @@ -7,7 +7,7 @@ #include "MantidAPI/CompositeFunction.h" #include "MantidCurveFitting/Functions/LinearBackground.h" #include "MantidCurveFitting/Constraints/BoundaryConstraint.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidKernel/UnitFactory.h" #include "MantidAPI/AnalysisDataService.h" #include "MantidAPI/WorkspaceFactory.h" @@ -22,6 +22,7 @@ using namespace Mantid::Kernel; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::Functions; +using namespace Mantid::CurveFitting::Algorithms; using namespace Mantid::DataObjects; class StretchExpTest_Jacobian : public Mantid::API::Jacobian { @@ -66,7 +67,7 @@ public: } void testAgainstMockData() { - Fit alg2; + Algorithms::Fit alg2; TS_ASSERT_THROWS_NOTHING(alg2.initialize()); TS_ASSERT(alg2.isInitialized()); diff --git a/Framework/CurveFitting/test/MultiDomainFunctionTest.h b/Framework/CurveFitting/test/MultiDomainFunctionTest.h index 5061940cfea2ff25922bda9e8024fb482fc0086e..ee12edfc8fde4539c26e4cc5de1d50656576b3d0 100644 --- a/Framework/CurveFitting/test/MultiDomainFunctionTest.h +++ b/Framework/CurveFitting/test/MultiDomainFunctionTest.h @@ -11,7 +11,7 @@ #include "MantidAPI/FrameworkManager.h" #include "MantidCurveFitting/CostFunctions/CostFuncLeastSquares.h" #include "MantidCurveFitting/FuncMinimizers/LevenbergMarquardtMDMinimizer.h" -#include "MantidCurveFitting/Fit.h" +#include "MantidCurveFitting/Algorithms/Fit.h" #include "MantidTestHelpers/FakeObjects.h" @@ -24,6 +24,7 @@ using namespace Mantid; using namespace Mantid::API; using namespace Mantid::CurveFitting; using namespace Mantid::CurveFitting::CostFunctions; +using namespace Mantid::CurveFitting::Algorithms; class MultiDomainFunctionTest_Function : public virtual IFunction1D, public virtual ParamFunction { @@ -187,7 +188,7 @@ public: multi->getFunction(2)->setParameter("A", 0); multi->getFunction(2)->setParameter("B", 0); - Fit fit; + Algorithms::Fit fit; fit.initialize(); fit.setProperty("Function", boost::dynamic_pointer_cast<IFunction>(multi)); fit.setProperty("InputWorkspace", ws1);