LogManagerTest.h 19.6 KB
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#ifndef LOG_MANAGER_TEST_H_
#define LOG_MANAGER_TEST_H_

#include "MantidAPI/LogManager.h"
#include "MantidKernel/Exception.h"
#include "MantidKernel/Matrix.h"
#include "MantidKernel/Property.h"
#include "MantidKernel/TimeSeriesProperty.h"
#include "MantidKernel/V3D.h"
#include <cxxtest/TestSuite.h>
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#include "MantidTestHelpers/NexusTestHelper.h"
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#include "MantidGeometry/Instrument/Goniometer.h"
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#include <cmath>
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using namespace Mantid::Kernel;
using namespace Mantid::API;
using namespace Mantid::Geometry;

// Helper class
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namespace {
class ConcreteProperty : public Property {
public:
  ConcreteProperty() : Property("Test", typeid(int)) {}
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  ConcreteProperty *clone() const override {
    return new ConcreteProperty(*this);
  }
  bool isDefault() const override { return true; }
  std::string getDefault() const override {
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    return "getDefault() is not implemented in this class";
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  }
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  std::string value() const override { return "Nothing"; }
  std::string setValue(const std::string &) override { return ""; }
  std::string setValueFromProperty(const Property &) override { return ""; }
  std::string setDataItem(const boost::shared_ptr<DataItem>) override {
    return "";
  }
  Property &operator+=(Property const *) override { return *this; }
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};

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template <typename T>
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void addTestTimeSeries(LogManager &run, const std::string &name) {
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  auto timeSeries = new TimeSeriesProperty<T>(name);
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  timeSeries->addValue("2012-07-19T16:17:00", 2);
  timeSeries->addValue("2012-07-19T16:17:10", 3);
  timeSeries->addValue("2012-07-19T16:17:20", 4);
  timeSeries->addValue("2012-07-19T16:17:30", 5);
  timeSeries->addValue("2012-07-19T16:17:40", 6);
  timeSeries->addValue("2012-07-19T16:17:50", 20);
  timeSeries->addValue("2012-07-19T16:18:00", 21);
  timeSeries->addValue("2012-07-19T16:18:10", 22);
  timeSeries->addValue("2012-07-19T16:19:20", 23);
  timeSeries->addValue("2012-07-19T16:19:20", 24);
  run.addProperty(timeSeries);
}
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}

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void addTimeSeriesEntry(LogManager &runInfo, std::string name, double val) {
  TimeSeriesProperty<double> *tsp;
  tsp = new TimeSeriesProperty<double>(name);
  tsp->addValue("2011-05-24T00:00:00", val);
  runInfo.addProperty(tsp);
}

class LogManagerTest : public CxxTest::TestSuite {
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public:
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  void testAddGetData() {
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    LogManager runInfo;

    Property *p = new ConcreteProperty();
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    TS_ASSERT_THROWS_NOTHING(runInfo.addProperty(p));
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    Property *pp = NULL;
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    TS_ASSERT_THROWS_NOTHING(pp = runInfo.getProperty("Test"));
    TS_ASSERT_EQUALS(p, pp);
    TS_ASSERT(!pp->name().compare("Test"));
    TS_ASSERT(dynamic_cast<ConcreteProperty *>(pp));
    TS_ASSERT_THROWS(pp = runInfo.getProperty("NotThere"),
                     Exception::NotFoundError);

    std::vector<Property *> props = runInfo.getProperties();
    TS_ASSERT(!props.empty());
    TS_ASSERT_EQUALS(props.size(), 1);
    TS_ASSERT(!props[0]->name().compare("Test"));
    TS_ASSERT(dynamic_cast<ConcreteProperty *>(props[0]));
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  }

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  void testRemoveLogData() {
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    LogManager runInfo;
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    Property *p = new ConcreteProperty();
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    TS_ASSERT_THROWS_NOTHING(runInfo.addProperty(p));
    TS_ASSERT_THROWS_NOTHING(runInfo.removeProperty("Test"));
    TS_ASSERT_EQUALS(runInfo.getProperties().size(), 0);
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  }

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  void testStartTime() {
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    LogManager runInfo;
    // Nothing there yet
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    TS_ASSERT_THROWS(runInfo.startTime(), std::runtime_error);
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    // Add run_start and see that get picked up
    const std::string run_start("2013-12-19T13:38:00");
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    auto run_start_prop =
        new PropertyWithValue<std::string>("run_start", run_start);
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    runInfo.addProperty(run_start_prop);
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    TS_ASSERT_EQUALS(runInfo.startTime(), DateAndTime(run_start));
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    // Add start_time and see that get picked up in preference
    const std::string start_time("2013-12-19T13:40:00");
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    auto start_time_prop =
        new PropertyWithValue<std::string>("start_time", start_time);
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    runInfo.addProperty(start_time_prop);
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    TS_ASSERT_EQUALS(runInfo.startTime(), DateAndTime(start_time));
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    // But get back run_start again if start_time is equal to the epoch
    const std::string epoch("1990-01-01T00:00:00");
    start_time_prop->setValue(epoch);
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    TS_ASSERT_EQUALS(runInfo.startTime(), DateAndTime(run_start));
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    // And back to failure if they're both that
    run_start_prop->setValue(epoch);
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    TS_ASSERT_THROWS(runInfo.startTime(), std::runtime_error);
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    // Set run_start back to valid value and make start_time contain nonsense
    run_start_prop->setValue(run_start);
    start_time_prop->setValue("__");
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    TS_ASSERT_EQUALS(runInfo.startTime(), DateAndTime(run_start));
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    // Now make start_time a completely different property type
    runInfo.removeProperty("start_time");
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    runInfo.addProperty(new PropertyWithValue<double>("start_time", 3.33));
    TS_ASSERT_EQUALS(runInfo.startTime(), DateAndTime(run_start));
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    // Now make run_start something invalid
    run_start_prop->setValue("notADate");
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    TS_ASSERT_THROWS(runInfo.startTime(), std::runtime_error);
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    // And check things if it's the wrong property type
    runInfo.removeProperty("run_start");
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    addTimeSeriesEntry(runInfo, "run_start", 4.44);
    TS_ASSERT_THROWS(runInfo.startTime(), std::runtime_error);
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  }
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  void testEndTime() {
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    LogManager runInfo;
    // Nothing there yet
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    TS_ASSERT_THROWS(runInfo.endTime(), std::runtime_error);
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    // Add run_end and see that get picked up
    const std::string run_end("2013-12-19T13:38:00");
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    auto run_end_prop = new PropertyWithValue<std::string>("run_end", run_end);
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    runInfo.addProperty(run_end_prop);
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    TS_ASSERT_EQUALS(runInfo.endTime(), DateAndTime(run_end));
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    // Add end_time and see that get picked up in preference
    const std::string end_time("2013-12-19T13:40:00");
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    auto end_time_prop =
        new PropertyWithValue<std::string>("end_time", end_time);
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    runInfo.addProperty(end_time_prop);
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    TS_ASSERT_EQUALS(runInfo.endTime(), DateAndTime(end_time));
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    // Set run_end back to valid value and make end_time contain nonsense
    run_end_prop->setValue(run_end);
    end_time_prop->setValue("__");
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    TS_ASSERT_EQUALS(runInfo.endTime(), DateAndTime(run_end));
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    // Now make end_time a completely different property type
    runInfo.removeProperty("end_time");
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    runInfo.addProperty(new PropertyWithValue<double>("end_time", 3.33));
    TS_ASSERT_EQUALS(runInfo.endTime(), DateAndTime(run_end));
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    // Now make run_end something invalid
    run_end_prop->setValue("notADate");
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    TS_ASSERT_THROWS(runInfo.endTime(), std::runtime_error);
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    // And check things if it's the wrong property type
    runInfo.removeProperty("run_end");
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    addTimeSeriesEntry(runInfo, "run_end", 4.44);
    TS_ASSERT_THROWS(runInfo.endTime(), std::runtime_error);
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  }

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  void testMemory() {
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    LogManager runInfo;
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    TS_ASSERT_EQUALS(runInfo.getMemorySize(), 0);

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    Property *p = new ConcreteProperty();
    runInfo.addProperty(p);

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    TS_ASSERT_EQUALS(runInfo.getMemorySize(),
                     sizeof(ConcreteProperty) + sizeof(void *));
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  }

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  void test_GetTimeSeriesProperty_Returns_TSP_When_Log_Exists() {
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    LogManager runInfo;
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    const std::string &name = "double_time_series";
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    const double value = 10.9;
    addTimeSeriesEntry(runInfo, name, value);

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    TimeSeriesProperty<double> *tsp(NULL);
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    TS_ASSERT_THROWS_NOTHING(tsp = runInfo.getTimeSeriesProperty<double>(name));
    TS_ASSERT_DELTA(tsp->firstValue(), value, 1e-12);
  }

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  void test_GetTimeSeriesProperty_Throws_When_Log_Does_Not_Exist() {
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    LogManager runInfo;
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    TS_ASSERT_THROWS(runInfo.getTimeSeriesProperty<double>("not_a_log"),
                     Exception::NotFoundError);
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  }

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  void
  test_GetTimeSeriesProperty_Throws_When_Log_Exists_But_Is_Not_Correct_Type() {
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    LogManager runInfo;
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    const std::string &name = "double_prop";
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    runInfo.addProperty(name, 5.6); // Standard double property

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    TS_ASSERT_THROWS(runInfo.getTimeSeriesProperty<double>(name),
                     std::invalid_argument);
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  }

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  void test_GetPropertyAsType_Throws_When_Property_Does_Not_Exist() {
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    LogManager runInfo;
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    TS_ASSERT_THROWS(runInfo.getPropertyValueAsType<double>("not_a_log"),
                     Exception::NotFoundError);
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  }

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  void test_GetPropertyAsType_Returns_Expected_Value_When_Type_Is_Correct() {
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    LogManager runInfo;
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    const std::string &name = "double_prop";
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    const double value = 5.6;
    runInfo.addProperty(name, value); // Standard double property

    double retrieved(0.0);
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    TS_ASSERT_THROWS_NOTHING(retrieved =
                                 runInfo.getPropertyValueAsType<double>(name));
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    TS_ASSERT_DELTA(retrieved, value, 1e-12);
  }

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  void test_GetPropertyAsType_Throws_When_Requested_Type_Does_Not_Match() {
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    LogManager runInfo;
    runInfo.addProperty("double_prop", 6.7); // Standard double property

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    TS_ASSERT_THROWS(runInfo.getPropertyValueAsType<int>("double_prop"),
                     std::invalid_argument);
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  }

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  void test_GetPropertyAsSingleValue_SingleValue_DoubleType() {
    doTest_GetPropertyAsSingleValue_SingleType<double>(1.0);
  }

  void test_GetPropertyAsSingleValue_SingleValue_FloatType() {
    doTest_GetPropertyAsSingleValue_SingleType<float>(1.0F);
  }

  void test_GetPropertyAsSingleValue_SingleValue_Int32Type() {
    doTest_GetPropertyAsSingleValue_SingleType<int32_t>(1);
  }

  void test_GetPropertyAsSingleValue_SingleValue_Int64Type() {
    doTest_GetPropertyAsSingleValue_SingleType<int64_t>(1L);
  }

  void test_GetPropertyAsSingleValue_SingleValue_Uint32Type() {
    doTest_GetPropertyAsSingleValue_SingleType<uint32_t>(1U);
  }

  void test_GetPropertyAsSingleValue_SingleValue_Uint64Type() {
    doTest_GetPropertyAsSingleValue_SingleType<uint64_t>(1UL);
  }

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  void test_GetPropertyAsSingleValue_SingleValue_StringType() {
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    LogManager runInfo;
    const std::string name = "string_prop", value = "1";
    runInfo.addProperty<std::string>(name, value);
    double result = std::nan("1");
    TS_ASSERT_THROWS_NOTHING(result = runInfo.getPropertyAsSingleValue(name));
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    TS_ASSERT_DELTA(1.0, result, 1e-12);
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  }

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  void test_GetPropertyAsSingleValue_TimeSeries_DoubleType() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<double>();
  }

  void test_GetPropertyAsSingleValue_TimeSeries_FloatType() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<float>();
  }

  void test_GetPropertyAsSingleValue_TimeSeries_Int32Type() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<int32_t>();
  }

  void test_GetPropertyAsSingleValue_TimeSeries_Int64Type() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<int64_t>();
  }

  void test_GetPropertyAsSingleValue_TimeSeries_Uint32Type() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<uint32_t>();
  }

  void test_GetPropertyAsSingleValue_TimeSeries_Uint64Type() {
    doTest_GetPropertyAsSingleValue_TimeSeriesType<uint64_t>();
  }

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  void test_GetPropertyAsSingleValue_Throws_If_String_Is_Invalid() {
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    LogManager runInfo;
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    const std::string name = "string_prop";
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    runInfo.addProperty<std::string>(name, "hello"); // not a number

    TS_ASSERT_THROWS(runInfo.getPropertyAsSingleValue(name),
                     std::invalid_argument);
  }

  void
  test_GetPropertyAsSingleValue_Throws_If_Type_Is_Not_Numeric_Or_TimeSeries_Numeric_Or_Valid_String() {
    LogManager runInfo;
    const std::string name = "bool_prop";
    const bool value(false);
    runInfo.addProperty<bool>(name, value); // Adds a bool property
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    TS_ASSERT_THROWS(runInfo.getPropertyAsSingleValue(name),
                     std::invalid_argument);
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  }

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  void
  test_GetPropertyAsSingleValue_Returns_Simple_Mean_By_Default_For_Time_Series() {
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    LogManager runInfo;
    const std::string name = "series";
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    addTestTimeSeries<double>(runInfo, name);
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    const double expectedValue(13.0);
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    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name), expectedValue,
                    1e-12);
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  }

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  void
  test_GetPropertyAsSingleValue_Returns_Correct_SingleValue_For_Each_StatisticType() {
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    LogManager runInfo;
    const std::string name = "series";
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    addTestTimeSeries<double>(runInfo, name);
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    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::Mean), 13.0,
                    1e-12);
    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::Minimum), 2.0,
                    1e-12);
    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::Maximum), 24.0,
                    1e-12);
    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::FirstValue),
                    2.0, 1e-12);
    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::LastValue),
                    24.0, 1e-12);
    TS_ASSERT_DELTA(runInfo.getPropertyAsSingleValue(name, Math::Median), 13.0,
                    1e-12);
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  }

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  void
  test_GetPropertyAsSingleValue_Returns_Expected_Single_Value_On_Successive_Calls_With_Different_Stat_Types() {
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    LogManager run;
    const std::string name = "series";
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    addTestTimeSeries<double>(run, name);
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    TS_ASSERT_EQUALS(run.getPropertyAsSingleValue(name, Math::Mean), 13.0);
    TS_ASSERT_EQUALS(run.getPropertyAsSingleValue(name, Math::Mean), 13.0);
    TS_ASSERT_EQUALS(run.getPropertyAsSingleValue(name, Math::Minimum), 2.0);
    TS_ASSERT_EQUALS(run.getPropertyAsSingleValue(name, Math::Minimum), 2.0);
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  }

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  void
  test_GetPropertyAsSingleValue_Returns_Correct_Value_On_Second_Call_When_Log_Has_Been_Replaced() {
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    LogManager runInfo;
    const std::string name = "double";
    double value(5.1);
    runInfo.addProperty(name, value);

    TS_ASSERT_EQUALS(runInfo.getPropertyAsSingleValue(name), value);

    // Replace the log with a different value
    value = 10.3;
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    runInfo.addProperty(name, value, /*overwrite*/ true);
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    TS_ASSERT_EQUALS(runInfo.getPropertyAsSingleValue(name), value);
  }

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  void test_clear() {
    // Set up a Run object with 3 properties in it (1 time series, 2 single
    // value)
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    LogManager runInfo;
    const std::string stringProp("aStringProp");
    const std::string stringVal("testing");
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    runInfo.addProperty(stringProp, stringVal);
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    const std::string intProp("anIntProp");
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    runInfo.addProperty(intProp, 99);
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    const std::string tspProp("tsp");
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    addTestTimeSeries<double>(runInfo, "tsp");
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    // Check it's set up right
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    TS_ASSERT_EQUALS(runInfo.getProperties().size(), 3);
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    auto tsp = runInfo.getTimeSeriesProperty<double>(tspProp);
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    TS_ASSERT_EQUALS(tsp->realSize(), 10)
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    // Do the clearing work
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    TS_ASSERT_THROWS_NOTHING(runInfo.clearTimeSeriesLogs());
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    // Check the time-series property is empty, but not the others
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    TS_ASSERT_EQUALS(runInfo.getProperties().size(), 3);
    TS_ASSERT_EQUALS(tsp->realSize(), 0)
    TS_ASSERT_EQUALS(runInfo.getPropertyValueAsType<std::string>(stringProp),
                     stringVal);
    TS_ASSERT_EQUALS(runInfo.getPropertyValueAsType<int>(intProp), 99);
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  }

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  void clearOutdatedTimeSeriesLogValues() {
    // Set up a Run object with 3 properties in it (1 time series, 2 single
    // value)
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    LogManager runInfo;
    const std::string stringProp("aStringProp");
    const std::string stringVal("testing");
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    runInfo.addProperty(stringProp, stringVal);
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    const std::string intProp("anIntProp");
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    runInfo.addProperty(intProp, 99);
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    const std::string tspProp("tsp");
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    addTestTimeSeries<double>(runInfo, "tsp");
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    // Check it's set up right
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    TS_ASSERT_EQUALS(runInfo.getProperties().size(), 3);
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    auto tsp = runInfo.getTimeSeriesProperty<double>(tspProp);
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    TS_ASSERT_EQUALS(tsp->realSize(), 10);
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    auto lastTime = tsp->lastTime();
    auto lastValue = tsp->lastValue();

    // Do the clearing work
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    TS_ASSERT_THROWS_NOTHING(runInfo.clearOutdatedTimeSeriesLogValues());
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    // Check the time-series property has 1 entry, & the others are unchanged
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    TS_ASSERT_EQUALS(runInfo.getProperties().size(), 3);
    TS_ASSERT_EQUALS(tsp->realSize(), 1);
    TS_ASSERT_EQUALS(tsp->firstTime(), lastTime);
    TS_ASSERT_EQUALS(tsp->firstValue(), lastValue);
    TS_ASSERT_EQUALS(runInfo.getPropertyValueAsType<std::string>(stringProp),
                     stringVal);
    TS_ASSERT_EQUALS(runInfo.getPropertyValueAsType<int>(intProp), 99);
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  }
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  /** Save and load to NXS file */
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  void test_nexus() {
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    NexusTestHelper th(true);
    th.createFile("LogManagerTest.nxs");

    LogManager run1;
    addTimeSeriesEntry(run1, "double_series", 45.0);
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    run1.addProperty(new PropertyWithValue<int>("int_val", 1234));
    run1.addProperty(new PropertyWithValue<std::string>(
        "string_val", "help_im_stuck_in_a_log_file"));
    run1.addProperty(new PropertyWithValue<double>("double_val", 5678.9));
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    addTimeSeriesEntry(run1, "phi", 12.3);
    addTimeSeriesEntry(run1, "chi", 45.6);
    addTimeSeriesEntry(run1, "omega", 78.9);
    addTimeSeriesEntry(run1, "proton_charge", 78.9);

    run1.saveNexus(th.file, "logs");
    th.file->openGroup("logs", "NXgroup");
    th.file->makeGroup("junk_to_ignore", "NXmaterial");
    th.file->makeGroup("more_junk_to_ignore", "NXsample");

    // ---- Now re-load the same and compare ------
    th.reopenFile();
    LogManager run2;
    run2.loadNexus(th.file, "logs");
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    TS_ASSERT(run2.hasProperty("double_series"));
    TS_ASSERT(run2.hasProperty("int_val"));
    TS_ASSERT(run2.hasProperty("string_val"));
    TS_ASSERT(run2.hasProperty("double_val"));
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    // This test both uses the goniometer axes AND looks up some values.

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    // Reload without opening the group (for backwards-compatible reading of old
    // files)
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    LogManager run3;
    th.file->openGroup("logs", "NXgroup");
    run3.loadNexus(th.file, "");
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    TS_ASSERT(run3.hasProperty("double_series"));
    TS_ASSERT(run3.hasProperty("int_val"));
    TS_ASSERT(run3.hasProperty("string_val"));
    TS_ASSERT(run3.hasProperty("double_val"));
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  }

  /** Check for loading the old way of saving proton_charge */
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  void test_legacy_nexus() {
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    NexusTestHelper th(true);
    th.createFile("LogManagerTest.nxs");
    th.file->makeGroup("sample", "NXsample", 1);
    th.file->writeData("proton_charge", 1.234);
    th.reopenFile();
    th.file->openGroup("sample", "NXsample");
    LogManager run3;
    run3.loadNexus(th.file, "");
  }
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private:
  template <typename T>
  void doTest_GetPropertyAsSingleValue_SingleType(const T value) {
    LogManager runInfo;
    const std::string name = "T_prop";
    runInfo.addProperty<T>(name, value);
    double result = std::nan("1");
    TS_ASSERT_THROWS_NOTHING(result = runInfo.getPropertyAsSingleValue(name));
    TS_ASSERT_EQUALS(value, static_cast<T>(result));
  }
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  template <typename T> void doTest_GetPropertyAsSingleValue_TimeSeriesType() {
    LogManager runInfo;
    const std::string name = "T_series";
    addTestTimeSeries<T>(runInfo, name);
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    const double expectedValue(13.0);
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    TS_ASSERT_DELTA(
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        runInfo.getPropertyAsSingleValue(name, Mantid::Kernel::Math::Mean),
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        expectedValue, 1e-12);
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  }
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};

//---------------------------------------------------------------------------------------
// Performance test
//---------------------------------------------------------------------------------------

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class LogManagerTestPerformance : public CxxTest::TestSuite {
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public:
  // This pair of boilerplate methods prevent the suite being created statically
  // This means the constructor isn't called when running other tests
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  static LogManagerTestPerformance *createSuite() {
    return new LogManagerTestPerformance();
  }
  static void destroySuite(LogManagerTestPerformance *suite) { delete suite; }
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  LogManagerTestPerformance() : m_testRun(), m_propName("test") {
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    addTestTimeSeries<double>(m_testRun, m_propName);
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  }

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  void test_Accessing_Single_Value_From_Times_Series_A_Large_Number_Of_Times() {
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    double value(0.0);
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    for (size_t i = 0; i < 20000; ++i) {
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      value = m_testRun.getPropertyAsSingleValue(m_propName);
    }
    // Enure variable is used so that it is not optimised away by the compiler
    value += 1.0;
  }

  LogManager m_testRun;
  std::string m_propName;
};

#endif