CompositeFunction.cpp 24.7 KB
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//----------------------------------------------------------------------
// Includes
//----------------------------------------------------------------------
#include "MantidKernel/Exception.h"
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#include "MantidAPI/CompositeFunction.h"
#include "MantidAPI/ParameterTie.h"
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#include "MantidAPI/IConstraint.h"
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#include <boost/lexical_cast.hpp>
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#include <boost/shared_array.hpp>
#include <sstream>
#include <iostream>
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#include <algorithm>
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namespace Mantid
{
namespace API
{

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DECLARE_FUNCTION(CompositeFunction)

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/// Copy contructor
CompositeFunction::CompositeFunction(const CompositeFunction& f)
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:m_nActive(f.m_nParams),m_nParams(f.m_nParams),m_iConstraintFunction(0)
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{
  m_functions.assign(f.m_functions.begin(),f.m_functions.end());
  m_activeOffsets.assign(f.m_activeOffsets.begin(),f.m_activeOffsets.end());
  m_paramOffsets.assign(f.m_paramOffsets.begin(),f.m_paramOffsets.end());
}

///Assignment operator
CompositeFunction& CompositeFunction::operator=(const CompositeFunction& f)
{
  m_nActive = f.m_nActive;
  m_nParams = f.m_nParams;
  m_functions.assign(f.m_functions.begin(),f.m_functions.end());
  m_activeOffsets.assign(f.m_activeOffsets.begin(),f.m_activeOffsets.end());
  m_paramOffsets.assign(f.m_paramOffsets.begin(),f.m_paramOffsets.end());
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  m_iConstraintFunction = f.m_iConstraintFunction;
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  return *this;
}

///Destructor
CompositeFunction::~CompositeFunction()
{
  for(int i=0;i<nFunctions();i++)
    if (m_functions[i]) delete m_functions[i];
}


/// Function initialization. Declare function parameters in this method.
void CompositeFunction::init()
{
}

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/** 
 * Writes itself into a string. Functions derived from CompositeFunction must
 * override this method with something like this:
 *   std::string NewFunction::asString()const
 *   {
 *      ostr << "composite=" << this->name() << ';';
 *      // write NewFunction's own attributes and parameters
 *      ostr << CompositeFunction::asString();
 *      // write NewFunction's own ties and constraints
 *      // ostr << ";constraints=(" << ... <<")";
 *   }
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 * @return the string representation of the composite function
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 */
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std::string CompositeFunction::asString()const
{
  std::ostringstream ostr;
  for(int i=0;i<nFunctions();i++)
  {
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    IFunction* fun = getFunction(i);
    bool isComp = dynamic_cast<CompositeFunction*>(fun) != 0;
    if (isComp) ostr << '(';
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    ostr << fun->asString();
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    if (isComp) ostr << ')';
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    if (i < nFunctions() - 1)
    {
      ostr << ';';
    }
  }
  std::string ties;
  for(int i=0;i<nParams();i++)
  {
    const ParameterTie* tie = getTie(i);
    if (tie)
    {
      IFunction* fun = getFunction(functionIndex(i));
      std::string tmp = tie->asString(fun);
      if (tmp.empty())
      {
        tmp = tie->asString(this);
        if (!tmp.empty())
        {
          if (!ties.empty())
          {
            ties += ",";
          }
          ties += tmp;
        }
      }
    }
  }
  if (!ties.empty())
  {
    ostr << ";ties=(" << ties << ")";
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  }
  return ostr.str();
}

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/// Function you want to fit to.
void CompositeFunction::function(double* out, const double* xValues, const int& nData)const
{
  if (nData <= 0) return;
  boost::shared_array<double> tmpOut(new double[nData]);
  for(int i=0;i<nFunctions();i++)
  {
    if (i == 0)
      m_functions[i]->function(out,xValues,nData);
    else
    {
      m_functions[i]->function(tmpOut.get(),xValues,nData);
      std::transform(out,out+nData,tmpOut.get(),out,std::plus<double>());
    }
  }
}

/** A Jacobian for individual functions
 */
class PartialJacobian: public Jacobian
{
  Jacobian* m_J;  ///< pointer to the overall Jacobian
  int m_iP0;      ///< offset in the overall Jacobian for a particular function
  int m_iaP0;      ///< offset in the active Jacobian for a particular function
public:
  /** Constructor
   * @param J A pointer to the overall Jacobian
   * @param iP0 The parameter index (declared) offset for a particular function
   * @param iap0 The active parameter index (declared) offset for a particular function
   */
  PartialJacobian(Jacobian* J,int iP0, int iap0):m_J(J),m_iP0(iP0),m_iaP0(iap0)
  {}
  /**
   * Overridden Jacobian::set(...).
   * @param iY The index of the data point
   * @param iP The parameter index of an individual function.
   * @param value The derivative value
   */
  void set(int iY, int iP, double value)
  {
      m_J->set(iY,m_iP0 + iP,value);
  }
 /**  Add number to all iY (data) Jacobian elements for a given iP (parameter)
  *   @param value Value to add
  *   @param iActiveP The index of an active parameter.
  */
  virtual void addNumberToColumn(const double& value, const int& iActiveP) 
  {
    m_J->addNumberToColumn(value,m_iaP0+iActiveP);
  }
};

/// Derivatives of function with respect to active parameters
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void CompositeFunction::functionDeriv(Jacobian* out, const double* xValues, const int& nData)
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{
  for(int i=0;i<nFunctions();i++)
  {
    PartialJacobian J(out,m_paramOffsets[i],m_activeOffsets[i]);
    m_functions[i]->functionDeriv(&J,xValues,nData);
  }
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}

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/// Derivatives to be used in covariance matrix calculation. 
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void CompositeFunction::calJacobianForCovariance(Jacobian* out, const double* xValues, const int& nData)
{
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  if (nData <= 0) return;
  for(int i=0;i<nFunctions();i++)
  {
    PartialJacobian J(out,m_paramOffsets[i],m_activeOffsets[i]);
    m_functions[i]->calJacobianForCovariance(&J,xValues,nData);
  }
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}


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/** Sets a new value to the i-th parameter.
 *  @param i The parameter index
 *  @param value The new value
 *  @param explicitlySet A boolean falgging the parameter as explicitly set (by user)
 */
void CompositeFunction::setParameter(int i, const double& value, bool explicitlySet)
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{
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  int iFun = functionIndex(i);
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  m_functions[ iFun ]->setParameter(i - m_paramOffsets[iFun],value,explicitlySet);
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}

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/** Get the i-th parameter.
 *  @param i The parameter index
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 *  @return value of the requested parameter
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 */
double CompositeFunction::getParameter(int i)const
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{
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  int iFun = functionIndex(i);
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  return m_functions[ iFun ]->getParameter(i - m_paramOffsets[iFun]);
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}

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/**
 * Sets a new value to a parameter by name.
 * @param name The name of the parameter.
 * @param value The new value
 * @param explicitlySet A boolean falgging the parameter as explicitly set (by user)
 */
void CompositeFunction::setParameter(const std::string& name, const double& value, bool explicitlySet)
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{
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  std::string pname;
  int index;
  parseName(name,index,pname);
  if (index < 0)
    throw std::invalid_argument("CompositeFunction::getParameter: parameter name must contain function index");
  else
  {   
    getFunction(index)->setParameter(pname,value,explicitlySet);
  }
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}

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/**
 * Parameters by name.
 * @param name The name of the parameter.
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 * @return value of the requested named parameter
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 */
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double CompositeFunction::getParameter(const std::string& name)const
{
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  std::string pname;
  int index;
  parseName(name,index,pname);
  if (index < 0)
    throw std::invalid_argument("CompositeFunction::getParameter: parameter name must contain function index");
  else
  {   
    return getFunction(index)->getParameter(pname);
  }
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}

/// Total number of parameters
int CompositeFunction::nParams()const
{
  return m_nParams;
}

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/**
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 * 
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 * @param name The name of a parameter
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 * @return index of the requested named parameter
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 */
int CompositeFunction::parameterIndex(const std::string& name)const
{
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  std::string pname;
  int index;
  parseName(name,index,pname);
  if (index < 0)
    throw std::invalid_argument("CompositeFunction::getParameter: parameter name must contain function index");

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  return getFunction(index)->parameterIndex(pname) + m_paramOffsets[index];
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}

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re #100    
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/// Returns the name of parameter
/// @param i The index
/// @return The name of the parameter
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std::string CompositeFunction::parameterName(int i)const
{
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  int iFun = functionIndex(i);
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  std::ostringstream ostr;
  ostr << 'f' << iFun << '.' << m_functions[ iFun ]->parameterName(i - m_paramOffsets[iFun]);
  return ostr.str();
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}

/// Number of active (in terms of fitting) parameters
int CompositeFunction::nActive()const
{
  return m_nActive;
}

/// Value of i-th active parameter. Override this method to make fitted parameters different from the declared
double CompositeFunction::activeParameter(int i)const
{
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  int iFun = functionIndexActive(i);
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  return m_functions[ iFun ]->activeParameter(i - m_activeOffsets[iFun]);
}

/// Set new value of i-th active parameter. Override this method to make fitted parameters different from the declared
void CompositeFunction::setActiveParameter(int i, double value)
{
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  int iFun = functionIndexActive(i);
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  m_functions[ iFun ]->setActiveParameter(i - m_activeOffsets[iFun],value);
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}

/// Update parameters after a fitting iteration
void CompositeFunction::updateActive(const double* in)
{
  for(int iFun = 0; iFun < int(m_functions.size()); iFun++)
  {
    m_functions[ iFun ]->updateActive(in + m_activeOffsets[ iFun ]);
  }
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  applyTies();
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}

/// Returns "global" index of active parameter i
int CompositeFunction::indexOfActive(int i)const
{
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  int iFun = functionIndexActive(i);
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  return m_paramOffsets[ iFun ] + m_functions[ iFun ]->indexOfActive(i - m_activeOffsets[iFun]);
}

/// Returns the name of active parameter i
std::string CompositeFunction::nameOfActive(int i)const
{
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  int iFun = functionIndexActive(i);
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  std::ostringstream ostr;
  ostr << 'f' << iFun << '.' << m_functions[ iFun ]->nameOfActive(i - m_activeOffsets[iFun]);
  return ostr.str();
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}

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/**
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 * query to see in the function is active
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 * @param i The index of a declared parameter
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 * @return true if parameter i is active
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 */
bool CompositeFunction::isActive(int i)const
{
  int iFun = functionIndex(i);
  return m_functions[ iFun ]->isActive(i - m_paramOffsets[iFun]);
}

/**
 * @param i A declared parameter index to be removed from active
 */
void CompositeFunction::removeActive(int i)
{
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  if (!isActive(i)) return;
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  int iFun = functionIndex(i);
  int ia = m_activeOffsets[iFun] + m_functions[iFun]->activeIndex(i - m_paramOffsets[iFun]);
  m_iFunctionActive.erase(m_iFunctionActive.begin()+ia);
  m_functions[ iFun ]->removeActive(i - m_paramOffsets[iFun]);

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  m_nActive--;
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  for(int j=iFun+1;j<nFunctions();j++)
    m_activeOffsets[j] -= 1;
}

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/** Makes a parameter active again. It doesn't change the parameter's tie.
 * @param i A declared parameter index to be restored to active
 */
void CompositeFunction::restoreActive(int i)
{
  int iFun = functionIndex(i);
  int ia = m_activeOffsets[iFun] + m_functions[iFun]->activeIndex(i - m_paramOffsets[iFun]);

  std::vector<int>::iterator itFun = 
    std::find_if(m_iFunctionActive.begin(),m_iFunctionActive.end(),std::bind2nd(std::greater<int>(),i));

  m_iFunctionActive.insert(itFun,1,ia);
  m_functions[ iFun ]->restoreActive(i - m_paramOffsets[iFun]);

  m_nActive++;
  for(int j=iFun+1;j<nFunctions();j++)
    m_activeOffsets[j] += 1;
}

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/**
 * @param i The index of a declared parameter
 * @return The index of declared parameter i in the list of active parameters or -1
 *         if the parameter is tied.
 */
int CompositeFunction::activeIndex(int i)const
{
  int iFun = functionIndex(i);
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  int j = m_functions[iFun]->activeIndex(i - m_paramOffsets[iFun]);

  if (j == -1) 
  {
    return -1;
  }

  return m_activeOffsets[iFun] + j;
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}

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/** Makes sure that the function is consistent. 
 */
void CompositeFunction::checkFunction()
{
  m_nParams = 0;
  m_nActive = 0;
  m_paramOffsets.clear();
  m_activeOffsets.clear();
  m_iFunction.clear();
  m_iFunctionActive.clear();

  std::vector<IFunction*> functions(m_functions.begin(),m_functions.end());
  m_functions.clear();

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  for(std::vector<IFunction*>::size_type i=0;i<functions.size();i++)
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  {
    IFunction* f = functions[i];
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    CompositeFunction* cf = dynamic_cast<CompositeFunction*>(f);
    if (cf) cf->checkFunction();
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    addFunction(f);
  }
}

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/** Add a function
 * @param f A pointer to the added function
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 * @return The function index
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 */
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int CompositeFunction::addFunction(IFunction* f)
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{
  m_iFunction.insert(m_iFunction.end(),f->nParams(),m_functions.size());
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  m_iFunctionActive.insert(m_iFunctionActive.end(),f->nActive(),m_functions.size());
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  m_functions.push_back(f);
  //?f->init();
  if (m_paramOffsets.size() == 0)
  {
    m_paramOffsets.push_back(0);
    m_activeOffsets.push_back(0);
    m_nParams = f->nParams();
    m_nActive = f->nActive();
  }
  else
  {
    m_paramOffsets.push_back(m_nParams);
    m_activeOffsets.push_back(m_nActive);
    m_nParams += f->nParams();
    m_nActive += f->nActive();
  }
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  return m_functions.size()-1;
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}

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/** Remove a function
 * @param i The index of the function to remove
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 * @param del The deletion flag. If true the function will be deleted otherwise - simply detached
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 */
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void CompositeFunction::removeFunction(int i, bool del)
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{
  if ( i >= nFunctions() )
    throw std::out_of_range("Function index out of range.");

  IFunction* fun = getFunction(i);

  int dna = fun->nActive();
  int dnp = fun->nParams();

  for(int j=0;j<nParams();)
  {
    ParameterTie* tie = getTie(j);
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    if (tie && tie->findParametersOf(fun))
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    {
      removeTie(j);
    }
    else
    {
      j++;
    }
  }

  // Shift down the function indeces for parameters
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  for(std::vector<int>::iterator it=m_iFunction.begin();it!=m_iFunction.end();)
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  {
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    if (*it == i)
    {
      it = m_iFunction.erase(it);
    }
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    else
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    {
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      if (*it > i)
      {
        *it -= 1;
      }
      it++;
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    }
  }

  // Shift down the function indeces for active parameters
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  for(std::vector<int>::iterator it=m_iFunctionActive.begin();it!=m_iFunctionActive.end();)
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  {
    if (*it == i)
    {
      it = m_iFunctionActive.erase(it);
    }
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    else
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    {
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      if (*it > i)
      {
        *it -= 1;
      }
      it++;
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    }
  }

  m_nActive -= dna;
  // Shift the active offsets down by the number of i-th function's active params
  for(int j=i+1;j<nFunctions();j++)
  {
    m_activeOffsets[j] -= dna;
  }
  m_activeOffsets.erase(m_activeOffsets.begin()+i);

  m_nParams -= dnp;
  // Shift the parameter offsets down by the total number of i-th function's params
  for(int j=i+1;j<nFunctions();j++)
  {
    m_paramOffsets[j] -= dnp;
  }
  m_paramOffsets.erase(m_paramOffsets.begin()+i);

  m_functions.erase(m_functions.begin()+i);
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  if (del)
  {
    delete fun;
  }
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}

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/** Replace a function with a new one. The old function is deleted.
 * @param f_old The pointer to the function to replace. If it's not
 *  a member of this composite function nothing happens
 * @param f_new A pointer to the new function
 */
void CompositeFunction::replaceFunction(const IFunction* f_old,IFunction* f_new)
{
  std::vector<IFunction*>::const_iterator it = 
    std::find(m_functions.begin(),m_functions.end(),f_old);
  if (it == m_functions.end()) return;
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  f_new->setMatrixWorkspace(f_old->getMatrixWorkspace(),f_old->getWorkspaceIndex(),-1,-1);
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  int iFun = it - m_functions.begin();
  replaceFunction(iFun,f_new);
}

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/** Replace a function with a new one. The old function is deleted.
 * @param i The index of the function to replace
 * @param f A pointer to the new function
 */
void CompositeFunction::replaceFunction(int i,IFunction* f)
{
  if ( i >= nFunctions() )
    throw std::out_of_range("Function index out of range.");

  IFunction* fun = getFunction(i);
  int na_old = fun->nActive();
  int np_old = fun->nParams();

  int na_new = f->nActive();
  int np_new = f->nParams();

  // Modify function indeces: The new function may have different number of parameters
  {
    std::vector<int>::iterator itFun = std::find(m_iFunction.begin(),m_iFunction.end(),i);
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    if(itFun != m_iFunction.end()) // functions must have at least 1 parameter
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    {
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      if (np_old > np_new)
      {
        m_iFunction.erase(itFun,itFun + np_old - np_new);
      }
      else if (np_old < np_new) 
      {
        m_iFunction.insert(itFun,np_new - np_old,i);
      }
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    }
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    else if (np_new > 0) // it could happen if the old function is an empty CompositeFunction
    {
      itFun = std::find_if(m_iFunction.begin(),m_iFunction.end(),std::bind2nd(std::greater<int>(),i));
      m_iFunction.insert(itFun,np_new,i);
    }
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  }

  // Modify function indeces: The new function may have different number of active parameters
  {
    std::vector<int>::iterator itFun = std::find(m_iFunctionActive.begin(),m_iFunctionActive.end(),i);
    if (itFun != m_iFunctionActive.end())
    {
      if (na_old > na_new)
      {
        m_iFunctionActive.erase(itFun,itFun + na_old - na_new);
      }
      else if (na_old < na_new) 
      {
        m_iFunctionActive.insert(itFun,na_new - na_old,i);
      }
    }
    else if (na_new > 0)
    {
      itFun = std::find_if(m_iFunctionActive.begin(),m_iFunctionActive.end(),std::bind2nd(std::greater<int>(),i));
      m_iFunctionActive.insert(itFun,na_new,i);
    }
  }

  int dna = na_new - na_old;
  m_nActive += dna;
  // Recalc the active offsets 
  for(int j=i+1;j<nFunctions();j++)
  {
    m_activeOffsets[j] += dna;
  }

  int dnp = np_new - np_old;
  m_nParams += dnp;
  // Shift the parameter offsets down by the total number of i-th function's params
  for(int j=i+1;j<nFunctions();j++)
  {
    m_paramOffsets[j] += dnp;
  }

  m_functions[i] = f;
  delete fun;
}

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/**
 * @param i The index of the function
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 * @return function at the requested index
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 */
IFunction* CompositeFunction::getFunction(int i)const
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{
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  if ( i >= nFunctions()  || i < 0)
  {
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    throw std::out_of_range("Function index out of range.");
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  }
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  return m_functions[i];
}

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/**
 * Get the index of the function to which parameter i belongs
 * @param i The parameter index
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 * @return function index of the requested parameter
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 */
int CompositeFunction::functionIndex(int i)const
{
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  if (i >= nParams() || i < 0)
  {
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    throw std::out_of_range("Function parameter index out of range.");
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  }
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  return m_iFunction[i];
}

/**
 * Get the index of the function to which parameter i belongs
 * @param i The active parameter index
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 * @return active function index of the requested parameter
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 */
int CompositeFunction::functionIndexActive(int i)const
{
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  if (i >= nParams() || i < 0)
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    throw std::out_of_range("Function parameter index out of range.");
  return m_iFunctionActive[i];
}

/**
* @param varName The variable name which may contain function index ( [f<index.>]name )
* @param index Receives function index or -1 
* @param name Receives the parameter name
*/
void CompositeFunction::parseName(const std::string& varName,int& index, std::string& name)
{
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  size_t i = varName.find('.');
  if (i == std::string::npos)
  {
    name = varName;
    index = -1;
    return;
  }
  else
  {
    if (varName[0] != 'f')
      throw std::invalid_argument("External function parameter name must start with 'f'");

    std::string sindex = varName.substr(1,i-1);
    index = boost::lexical_cast<int>(sindex);

    if (i == varName.size() - 1)
      throw std::invalid_argument("Name cannot be empty");

    name = varName.substr(i+1);
  }
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}

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/** Returns the index of parameter i as it declared in its function
 * @param i The parameter index
 * @return The local index of the parameter
 */
int CompositeFunction::parameterLocalIndex(int i)const
{
  int iFun = functionIndex(i);
  return i - m_paramOffsets[iFun];
}

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/** Returns the name of parameter i as it declared in its function
 * @param i The parameter index
 * @return The pure parameter name (without the function identifier f#.)
 */
std::string CompositeFunction::parameterLocalName(int i)const
{
  int iFun = functionIndex(i);
  return m_functions[ iFun ]->parameterName(i - m_paramOffsets[iFun]);
}

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/** Initialize the function providing it the workspace
 * @param workspace The shared pointer to a workspace to which the function will be fitted
 * @param spec The number of a spectrum for fitting
 * @param xMin The minimum bin index of spectrum spec that will be used in fitting
 * @param xMax The maximum bin index of spectrum spec that will be used in fitting
 */
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void CompositeFunction::setMatrixWorkspace(boost::shared_ptr<const API::MatrixWorkspace> workspace,int spec,int xMin,int xMax)
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{
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  IFunction::setMatrixWorkspace(workspace,spec,xMin,xMax);
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  for(int i=0;i<nFunctions();i++)
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  {
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    getFunction(i)->setMatrixWorkspace(workspace,spec,xMin,xMax);
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  }
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}

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/**
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 * Apply the ties.
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 */
void CompositeFunction::applyTies()
{
  for(int i=0;i<nFunctions();i++)
  {
    getFunction(i)->applyTies();
  }
}

/**
 * Clear the ties. 
 */
void CompositeFunction::clearTies()
{
  for(int i=0;i<nFunctions();i++)
  {
    getFunction(i)->clearTies();
  }
}

/** Removes i-th parameter's tie if it is tied or does nothing.
 * @param i The index of the tied parameter.
 * @return True if successfull
 */
bool CompositeFunction::removeTie(int i)
{
  int iFun = functionIndex(i);
  bool res = m_functions[ iFun ]->removeTie(i - m_paramOffsets[iFun]);
  if (res)
  {
    m_nActive++;
  }
  return res;
}

/** Get the tie of i-th parameter
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 * @param i The parameter index
 * @return A pointer to the tie.
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 */
ParameterTie* CompositeFunction::getTie(int i)const
{
  int iFun = functionIndex(i);
  return m_functions[ iFun ]->getTie(i - m_paramOffsets[iFun]);
}

/**
 * Attaches a tie to this function. The attached tie is owned by the function.
 * @param tie A pointer to a new tie
 */
void CompositeFunction::addTie(ParameterTie* tie)
{
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  int i = getParameterIndex(*tie);
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  if (i < 0)
  {
    throw std::logic_error("Trying to use a tie on a parameter not belonging to this function");
  }
  int iFun = functionIndex(i);
  m_functions[iFun]->addTie(tie);
}

/**
 * Declare a new parameter. To used in the implementation'c constructor.
 * @param name The parameter name.
 * @param initValue The initial value for the parameter
 */
void CompositeFunction::declareParameter(const std::string& name,double initValue )
{
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  (void) name; //Avoid compiler warning
  (void) initValue; //Avoid compiler warning
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  throw Kernel::Exception::NotImplementedError("CompositeFunction cannot not have its own parameters.");
}

/** Add a constraint
 *  @param ic Pointer to a constraint.
 */
void CompositeFunction::addConstraint(IConstraint* ic)
{
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  int i = getParameterIndex(*ic);
  int iFun = functionIndex(i);
  getFunction(iFun)->addConstraint(ic);
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}

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void CompositeFunction::setParametersToSatisfyConstraints()
{
  for(int i=0;i<nFunctions();i++)
  {
    getFunction(i)->setParametersToSatisfyConstraints();
  }
}

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re #100    
Nick Draper committed
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/// Get constraint
/// @param i the index
/// @return A pointer to the constraint
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IConstraint* CompositeFunction::getConstraint(int i)const
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{
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  int iFun = functionIndex(i);
  return m_functions[ iFun ]->getConstraint(i - m_paramOffsets[iFun]);
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}

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/** Remove a constraint
 * @param parName The name of a parameter which constarint to remove.
 */
void CompositeFunction::removeConstraint(const std::string& parName)
{
  int iPar = parameterIndex(parName);
  int iFun = functionIndex(iPar);
  getFunction(iFun)->removeConstraint(parameterLocalName(iPar));
}

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/** Checks if a constraint has been explicitly set
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 *  @param i The parameter index
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 *  @return true if the function is explicitly set
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 */
bool CompositeFunction::isExplicitlySet(int i)const
{
  int iFun = functionIndex(i);
  return m_functions[ iFun ]->isExplicitlySet(i - m_paramOffsets[iFun]);
}

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/**
 * Returns the index of parameter if the ref points to one of the member function or -1
 * @param ref A reference to a parameter
 * @return Parameter index or -1
 */
int CompositeFunction::getParameterIndex(const ParameterReference& ref)const
{
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  if (ref.getFunction() == this && ref.getIndex() < nParams())
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  {
    return ref.getIndex();
  }
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  for(int iFun=0;iFun<nFunctions();iFun++)
  {
    int iLocalIndex = getFunction(iFun)->getParameterIndex(ref);
    if (iLocalIndex >= 0)
    {
      return m_paramOffsets[iFun] + iLocalIndex;
    }
  }
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  return -1;
}

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/**
 * @param ref The reference
 * @return A function containing parameter pointed to by ref
 */
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IFitFunction* CompositeFunction::getContainingFunction(const ParameterReference& ref)const
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{
  if (ref.getFunction() == this && ref.getIndex() < nParams())
  {
    return ref.getFunction();
  }
  for(int iFun=0;iFun<nFunctions();iFun++)
  {
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    IFunction* fun = static_cast<IFunction*>(getFunction(iFun)->getContainingFunction(ref));
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    if (fun)
    {
      return getFunction(iFun);
    }
  }
  return NULL;
}
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/**
 * @param fun The searched function
 * @return A function containing the argument function fun
 */
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IFitFunction* CompositeFunction::getContainingFunction(const IFitFunction* fun)
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{
  if (fun == this)
  {
    return this;
  }
  for(int iFun=0;iFun<nFunctions();iFun++)
  {
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    IFunction* f = static_cast<IFunction*>(getFunction(iFun)->getContainingFunction(fun));
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    if (f)
    {
      return getFunction(iFun);
    }
  }
  return NULL;
}

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void CompositeFunction::setWorkspace(boost::shared_ptr<Workspace> ws,const std::string& slicing)
{
  IFunction::setWorkspace(ws,slicing);
  for(int iFun=0;iFun<nFunctions();iFun++)
  {
    getFunction(iFun)->setUpNewStuff(m_xValues,m_weights);
  }
}

void CompositeFunction::setUpNewStuff(boost::shared_array<double> xs,boost::shared_array<double> weights)
{
  IFunction::setUpNewStuff(xs,weights);
  for(int iFun=0;iFun<nFunctions();iFun++)
  {
    getFunction(iFun)->setUpNewStuff(xs,weights);
  }
}

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} // namespace API
} // namespace Mantid