Yaml updates. Add manual fortify job.

.gitlab-ci.yml

@@ -4,8 +4,14 @@ variables:
 stages:
   - test
   - analysis
+  
+workflow:
+  rules:
+    - if: $CI_COMMIT_BRANCH
 
 mac_gcc_testing:
+  stage: test
+  needs: []
   tags:
     - mac
   script:
@@ -13,9 +19,6 @@ mac_gcc_testing:
     - git --version
     - module load cmake gcc/4.8.5 qt/5.9.1 vtk/8.1.0
     - which cmake
-    - which python
-    - python --version
-    - python TriBITS/tribits/ci_support/clone_extra_repos.py
     - mkdir build
     - cd build
     - cmake -DTasmanian_DIR=/opt/tasmanian/6.0 ^
@@ -33,18 +36,17 @@ mac_gcc_testing:
         -D ExperimentalTest
 
 mac_llvm_testing:
+  stage: test
+  needs: []
   tags:
     - mac
   script:
     - which git
     - git --version
     - module load cmake qt/5.9.1 vtk/8.1.0
-    - which python
-    - python --version
-    - python TriBITS/tribits/ci_support/clone_extra_repos.py
+    - which cmake
     - mkdir build
     - cd build
-    - which cmake
     - export radix_ENABLE_Fortran=OFF
     - cmake -DTasmanian_DIR=/opt/tasmanian/6.0 ^
         -DBUILDNAME=$(uname -s)-LLVM-Debug-${CI_BUILD_REF_NAME} ^
@@ -61,19 +63,20 @@ mac_llvm_testing:
         -D ExperimentalTest
 
 linux_gcc_testing:
+  stage: test
+  needs: []
   tags:
     - linux
   script:
     - which git
     - git --version
-    - which python
-    - python --version
-    - python TriBITS/tribits/ci_support/clone_extra_repos.py
-    - mkdir build
-    - cd build
     - module load cmake qt/5.9.0 vtk/8.1.0
     - which cmake
+    - mkdir build
+    - cd build
     - cmake -DTasmanian_DIR=/opt/vendors/tasmanian/6.0 ^
+        -DXercesC_INCLUDE_DIR=/opt/vendors/xerces-c/include ^
+        -DXercesC_LIBRARY=/opt/vendors/xerces-c/lib64/libxerces-c.so ^
         -DBUILDNAME=$(uname -s)-GCC-4.8.5-Release-${CI_BUILD_REF_NAME} ^
         -DCMAKE_BUILD_TYPE=Release ^
         -Dradix_ENABLE_TESTS=ON ^
@@ -89,19 +92,19 @@ linux_gcc_testing:
 
 linux_analysis:
   stage: analysis
+  needs: ["linux_gcc_testing"]
   tags:
     - linux
   script:
     - which git
     - git --version
-    - which python
-    - python --version
-    - python TriBITS/tribits/ci_support/clone_extra_repos.py
-    - mkdir build
-    - cd build
     - module load cmake valgrind
     - which cmake
+    - mkdir build
+    - cd build
     - cmake -DTasmanian_DIR=/opt/vendors/tasmanian/6.0/ ^
+        -DXercesC_INCLUDE_DIR=/opt/vendors/xerces-c/include ^
+        -DXercesC_LIBRARY=/opt/vendors/xerces-c/lib64/libxerces-c.so ^
         -DCOVERAGE_EXTRA_FLAGS="-s ${CI_PROJECT_DIR}/googletest -d" ^
         -DMEMCHECK_COMMAND=$(which valgrind) ^
         -DBUILDNAME=$(uname -s)-GCC-4.8.5-Debug-${CI_BUILD_REF_NAME} ^
@@ -112,27 +115,65 @@ linux_analysis:
         -Dradix_ENABLE_TESTS=ON ^
         -Dradix_ENABLE_radixplot=OFF ^
         -Dradix_ENABLE_radixwidgets=OFF ..
-    - ctest --verbose --output-on-failure^
+    - ctest --verbose --output-on-failure ^
         -D ExperimentalStart ^
         -D ExperimentalBuild ^
         -D ExperimentalTest ^
         -D ExperimentalMemCheck ^
         -D ExperimentalCoverage
   allow_failure: true
+  
+linux-fortify:
+  stage: analysis
+  needs: []
+  tags:
+    - linux
+  rules:
+    - when: manual
+  script:
+    - which git
+    - git --version
+    - module load cmake qt/5.9.0 vtk/8.1.0 fortify
+    - which cmake
+    - mkdir build
+    - cd build
+    - export CC="sourceanalyzer -b radix gcc"
+    - export CXX="sourceanalyzer -b radix g++"
+    - cmake -DTasmanian_DIR=/opt/vendors/tasmanian/6.0 ^
+        -DXercesC_INCLUDE_DIR=/opt/vendors/xerces-c/include ^
+        -DXercesC_LIBRARY=/opt/vendors/xerces-c/lib64/libxerces-c.so ^
+        -DBUILDNAME=$(uname -s)-GCC-4.8.5-Release-${CI_BUILD_REF_NAME} ^
+        -DCMAKE_BUILD_TYPE=Release ^
+        -Dradix_ENABLE_TESTS=ON ^
+        -DENABLE_PYTHON_WRAPPERS=ON ^
+        -Dradix_ENABLE_SECONDARY_TESTED_CODE=ON ^
+        -Dradix_ENABLE_TESTS=ON -DTPL_ENABLE_VTK=ON ^
+        -Dradix_ENABLE_radixplot=OFF ^
+        -Dradix_ENABLE_radixwidgets=OFF ..
+    ## clean after cmake configure
+    - sourceanalyzer -b radix -clean
+    - make
+    - sourceanalyzer -b radix -scan -f scanResults.fpr
+    - ReportGenerator -format PDF -f radixReport.pdf -source scanResults.fpr -template "DeveloperWorkbook.xml"
+    - mv radixReport.pdf ..
+  artifacts:
+    paths:
+    - radixReport.pdf
+    expire_in: 1 week
+  allow_failure: true
 
 linux_openmpi_testing:
+  stage: test
+  needs: []
   tags:
     - linux
   script:
     - which git
     - git --version
-    - which python
-    - python --version
-    - python TriBITS/tribits/ci_support/clone_extra_repos.py
-    - mkdir build_mpi
-    - cd build_mpi
     - module load cmake openmpi/1.8.1
     - which cmake
+    - mkdir build_mpi
+    - cd build_mpi
     - cmake -DBUILDNAME=$(uname -s)-MPI-1.8.1-Debug-${CI_BUILD_REF_NAME} ^
         -DTPL_ENABLE_MPI=ON ^
         -DMPI_BASEDIR=`dirname $(dirname $(which mpicc))` ^
@@ -148,18 +189,24 @@ linux_openmpi_testing:
         -D ExperimentalTest
 
 windows_mingw_testing:
+  stage: test
+  needs: []
   tags:
     - windows
   script:
     - ci\windows_mingw_testing.bat
 
 windows_msvc_testing:
+  stage: test
+  needs: []
   tags:
     - nsmwin10
   script:
     - ci\windows_msvc_testing.bat
 
 windows_intel_shared_testing:
+  stage: test
+  needs: []
   tags:
     - nsmwin10
   script: