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Commit 131b88fa authored by Purves, Murray's avatar Purves, Murray
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Amending PCF writer to correctly set string lengths

parent 8e362bbd
Pipeline #16161 failed with stages
in 7 minutes and 24 seconds
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radixio/spectrumpcfstream.i.hh
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......@@ -334,21 +334,22 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
{
radix_line(" File has DHS-type header");
stream.write("DHS", 3);
stream.write(mData->lastModifiedHash().c_str(), 7);
stream.write(mData->uuid().c_str(), 36);
stream.write(mData->inspection().c_str(), 16);
stream.write(make_length(mData->lastModifiedHash(), 7).c_str(), 7);
stream.write(make_length(mData->uuid(), 36).c_str(), 36);
stream.write(make_length(mData->inspection(), 16).c_str(), 16);
stream.writeShort(mData->laneNumber());
stream.write(mData->measurementRemark().c_str(), 26);
stream.write(mData->instrumentType().c_str(), 28);
stream.write(mData->manufacturer().c_str(), 28);
stream.write(mData->instrumentModel().c_str(), 18);
stream.write(mData->instrumentID().c_str(), 18);
stream.write(mData->itemDescription().c_str(), 20);
stream.write(mData->measurementLocationName().c_str(), 16);
stream.write(mData->measurementLocationCoords().c_str(), 16);
stream.write(make_length(mData->measurementRemark(), 26).c_str(), 26);
stream.write(make_length(mData->instrumentType(), 28).c_str(), 28);
stream.write(make_length(mData->manufacturer(), 28).c_str(), 28);
stream.write(make_length(mData->instrumentModel(), 18).c_str(), 18);
stream.write(make_length(mData->instrumentID(), 18).c_str(), 18);
stream.write(make_length(mData->itemDescription(), 20).c_str(), 20);
stream.write(make_length(mData->measurementLocationName(), 16).c_str(), 16);
stream.write(make_length(mData->measurementLocationCoords(), 16).c_str(),
16);
stream.writeShort(mData->itemDetectorDistance());
stream.writeShort(mData->occupancyNumber());
stream.write(mData->cargoType().c_str(), 16);
stream.write(make_length(mData->cargoType(), 16).c_str(), 16);
// Add bytes written directly to eafstream count
stream.setBytesWritten(stream.bytesWritten() + 248);
}
......@@ -356,7 +357,7 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
{
radix_line(" File has non-DHS-type header");
stream.write(" ", 3);
stream.write(mData->energyCalibrationLabel().c_str(), 4);
stream.write(make_length(mData->energyCalibrationLabel(), 4).c_str(), 4);
stream.writeFloat(mData->energyCalibrationOffset());
stream.writeFloat(mData->energyCalibrationGain());
stream.writeFloat(mData->energyCalibrationQuadraticTerm());
......@@ -365,7 +366,8 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
// Add bytes written directly to eafstream count
stream.setBytesWritten(stream.bytesWritten() + 7);
// Skip to 256 bytes (end of header)
stream.write(" ", 256 - stream.bytesWritten());
stream.write(make_length(" ", 256 - stream.bytesWritten()).c_str(),
256 - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(256);
}
......@@ -378,11 +380,12 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
{
radix_line(" Regular deviation pairs found:");
// Write regular deviation pairs
stream.write(mData->deviationPairPresence().c_str(), 20);
stream.write(make_length(mData->deviationPairPresence(), 20).c_str(), 20);
// Add bytes written directly to eafstream count
stream.setBytesWritten(stream.bytesWritten() + 20);
// Skip to 512 bytes (start of pairs)
stream.write(" ", 512 - stream.bytesWritten());
stream.write(make_length(" ", 512 - stream.bytesWritten()).c_str(),
512 - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(512);
......@@ -407,17 +410,24 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
}
radix_line("|");
}
// Skip to 256*83 bytes (start of spectral data)
stream.write(make_length(" ", (256 * 83) - stream.bytesWritten()).c_str(),
(256 * 83) - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(256 * 83);
}
else if (mData->deviationPairPresence().compare(
"DeviationPairsInFileCompressed") == 0)
{
radix_line(" Compressed deviation pairs found:");
// Write compressed deviation pairs
stream.write(mData->deviationPairPresence().c_str(), 30);
stream.write(make_length(mData->deviationPairPresence(), 30).c_str(), 30);
// Add bytes written directly to eafstream count
stream.setBytesWritten(stream.bytesWritten() + 30);
// Skip to 512 bytes (start of pairs)
stream.write(" ", 512 - stream.bytesWritten());
stream.write(make_length(" ", 512 - stream.bytesWritten()).c_str(),
512 - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(512);
......@@ -446,11 +456,22 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
}
radix_line("|");
}
// Skip to 256*83 bytes (start of spectral data)
stream.write(make_length(" ", (256 * 83) - stream.bytesWritten()).c_str(),
(256 * 83) - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(256 * 83);
}
else
{
// Don't write deviation pairs
radix_line(" No deviation pairs found:");
// Skip to 512 bytes (start of spectral data)
stream.write(make_length(" ", 512 - stream.bytesWritten()).c_str(),
512 - stream.bytesWritten());
// Add bytes written directly to eafstream count
stream.setBytesWritten(512);
}
// Write spectrum data
......@@ -479,9 +500,9 @@ bool SpectrumPCFStream<data_type>::write_to(const std::string &file) const
char delim = 255;
ss << delim << trim_string(title) << delim << trim_string(description)
<< delim << trim_string(source);
stream.write(ss.str().c_str(), 180);
stream.write(dateTime.c_str(), 23);
stream.write(tag.c_str(), 1);
stream.write(make_length(ss.str(), 180).c_str(), 180);
stream.write(make_length(dateTime, 23).c_str(), 23);
stream.write(make_length(tag, 1).c_str(), 1);
// Add bytes written directly to eafstream count
stream.setBytesWritten(stream.bytesWritten() + 204);
stream.writeFloat(liveTime);
......
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