Notebook name: normalization_batch.ipynb
This notebook normalized the imaging data (tiff or fits) by removing the background and fixing the fluctuations of the neutron beam. You will need:
If you need help accessing this notebook, check the How To > Start the python notebooks tutorial.
Check the full tutorial here
You need to provide the list of samples, OB and DF (if needed). To do so, just SHIFT + ENTER the following cell to display a selection tool wizard.
The dialogbox will start listing the files from the IPTS folder you selected in the first cell. Feel free to navigate to find your data set.
Check the file selection tool tutorial to learn how to use the file selector tool.
SHIFT + ENTER to run the cell. A new User Interface (UI) will come to life. If you can not see the UI, check behind the notebook window.
Just click OK if you do not want to select any region of interest (ROI).
If you want to provide one, or more, ROI, click + on the right of the GUI and move/resize the ROI using the mouse, or the table values.
Select where you want to output the normalized data, then run the following cell. Once the output folder selected, a folder name after the input data folder is created and will contain all the normalized data.
This cell runs the normalization in batch mode, this means that you can keep working on the notebook (select more data to normalized) while the data are normalized behind.