Commit e451fa25 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

Ready to deploy new tutorial on rotate and crop images

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- From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i>
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......@@ -116,7 +116,7 @@
"title": "Notebooks Tutorials",
"tags": [],
"description": "",
"content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
"content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
},
{
"uri": "/tutorial/how_to_start_amira/",
......@@ -235,7 +235,7 @@
"title": "Display Integrated Images",
"tags": [],
"description": "",
"content": " Notebook name: display_integrated_stack_of_images.ipynb\nDescription This notebook will simply the integrated image of all the images from the input folder.\nSelect your IPTS Need help using the IPTS selector?\n Select the Input Folder Using the folder selection tool, select the folder that contains the images you need to separate.\nIntegrated image Then the integrated image is displayed with a colorbar.\n"
"content": " Notebook name: display_integrated_stack_of_images.ipynb\nDescription This notebook will simply the integrated image of all the images (TIFF or FITS) from the input folder.\nSelect your IPTS Need help using the IPTS selector?\n Select the Input Folder Using the folder selection tool, select the folder that contains the images you need to separate.\nIntegrated image Then the integrated image is displayed with a colorbar.\n"
},
{
"uri": "/tutorial/notebooks/display_and_export_images_with_timestamp/",
......@@ -277,7 +277,7 @@
"title": "From .dsc Time Info to ASCII File vs Time",
"tags": [],
"description": "",
"content": "Notebook name: from_dsc_time_info_to_ascii_file_vs_time.ipynb\n"
"content": " Notebook name: from_dsc_time_info_to_ascii_file_vs_time.ipynb\nDescription There are cases where you will need to use the metadata from the dsc file to retrieve the time information as the files themselves do not have this information any more (because they are not the original images anymore, because they have been moved, \u0026hellip;).\nSo this notebook will use the dsc files and match the time stamp information they contain with the base file name. Then will create an ascii file of the equivalent TIFF image vs time stamp\nINPUT\nfolder containing .dsc files\nOUTPUT\nfilename_vs_timestamp.txt\nsample_0000.tif 1045454545 sample_0001.tif 1045454546 sample_0002.tfi 1045454547 Instructions Select your IPTS Need help using the IPTS selector?\n Select the DSC Folder Using the folder selection tool, select the folder that contains the .dsc files.\nSelect the Image Folder Using the folder selection tool, select the folder that contains the images (TIFF or FITS) to match with the dsc files.\nSelect the Output Folder Using the folder selection tool, select the folder where the ascii file listing the image files and their time stamp will be created.\nAscii File Created Once you have selected the output folder, the ascii file will be automatically created and will look something like this\n"
},
{
"uri": "/tutorial/notebooks/from_attenuation_to_concentration/",
......@@ -403,7 +403,7 @@
"title": "Rotate and Crop Images",
"tags": [],
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"content": "Notebook name: rotate_and_crop_images.ipynb\n"
"content": " Notebook name: rotate_and_crop_images.ipynb\nDescription You will use this notebook if you need to crop and/or rotate a set of images.\nThe application will ask you to select the images (FITS or TIFF) you want to modify. Then a User Interface (UI) will allow you to define the cropping region as well as the rotation angle to apply to the images. You will be able to browse through the images to check the result and then create the transformed images before exporting them to a new output folder as TIFF images.\nHow it Works Select your IPTS Need help using the IPTS selector?\n Select your Images Using the file selection tool, select the images you want to work with.\nOnce selected, your images will be automatically loaded.\nCrop and/or Rotate your Images This is where you will apply the correction to your images.\nHow to crop the images: move the box around by clicking one of the edge and without releasing the mouse move the box to the new location resize the box by clicking the bottom right corner and dragging it to the new size. How to rotate the images: Simply by entering the angle value in the text field. The angle is using the geometrical convention, with counter clock wise rotation direction.\nApply changes to all images: By clicking the apply on all images button, you will apply those correction to all images and quit this UI\nExport Images Using the folder selection tool, select where you want the output images to be created.\nThe program will automatically create a folder based on the rotation angle you defined\nFor example:\nA folder named rotated_0.5deg is created when the angle is 0.5 degrees.\n"
},
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......@@ -2270,6 +2270,70 @@ and check out the items one by one.</p>
......@@ -2666,20 +2730,20 @@ and check out the items one by one.</p>
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1551292994"></script>
<script src="/js/perfect-scrollbar.min.js?1551292994"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1551292994"></script>
<script src="/js/jquery.sticky.js?1551292994"></script>
<script src="/js/featherlight.min.js?1551292994"></script>
<script src="/js/html5shiv-printshiv.min.js?1551292994"></script>
<script src="/js/highlight.pack.js?1551292994"></script>
<script src="/js/clipboard.min.js?1551373722"></script>
<script src="/js/perfect-scrollbar.min.js?1551373722"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1551373722"></script>
<script src="/js/jquery.sticky.js?1551373722"></script>
<script src="/js/featherlight.min.js?1551373722"></script>
<script src="/js/html5shiv-printshiv.min.js?1551373722"></script>
<script src="/js/highlight.pack.js?1551373722"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom.71422.js?1551292994"></script>
<script src="/js/learn.js?1551292994"></script>
<script src="/js/hugo-learn.js?1551292994"></script>
<script src="/js/modernizr.custom.71422.js?1551373722"></script>
<script src="/js/learn.js?1551373722"></script>
<script src="/js/hugo-learn.js?1551373722"></script>
<link href="/mermaid/mermaid.css?1551292994" type="text/css" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1551292994"></script>
<link href="/mermaid/mermaid.css?1551373722" type="text/css" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1551373722"></script>
<script>
mermaid.initialize({ startOnLoad: true });
</script>
......
......@@ -13,19 +13,19 @@
<title>Proposal Confirmation :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1551292994" rel="stylesheet">
<link href="/css/font-awesome.min.css?1551292994" rel="stylesheet">
<link href="/css/hybrid.css?1551292994" rel="stylesheet">
<link href="/css/featherlight.min.css?1551292994" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1551292994" rel="stylesheet">
<link href="/css/auto-complete.css?1551292994" rel="stylesheet">
<link href="/css/theme.css?1551292994" rel="stylesheet">
<link href="/css/hugo-theme.css?1551292994" rel="stylesheet">
<link href="/css/nucleus.css?1551373722" rel="stylesheet">
<link href="/css/font-awesome.min.css?1551373722" rel="stylesheet">
<link href="/css/hybrid.css?1551373722" rel="stylesheet">
<link href="/css/featherlight.min.css?1551373722" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1551373722" rel="stylesheet">
<link href="/css/auto-complete.css?1551373722" rel="stylesheet">
<link href="/css/theme.css?1551373722" rel="stylesheet">
<link href="/css/hugo-theme.css?1551373722" rel="stylesheet">
<link href="/css/theme-blue.css?1551292994" rel="stylesheet">
<link href="/css/theme-blue.css?1551373722" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1551292994"></script>
<script src="/js/jquery-2.x.min.js?1551373722"></script>
<style type="text/css">
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1551292994"></script>
<script type="text/javascript" src="/js/auto-complete.js?1551292994"></script>
<script type="text/javascript" src="/js/lunr.min.js?1551373722"></script>
<script type="text/javascript" src="/js/auto-complete.js?1551373722"></script>
<script type="text/javascript">
var baseurl = "";
</script>
<script type="text/javascript" src="/js/search.js?1551292994"></script>
<script type="text/javascript" src="/js/search.js?1551373722"></script>
</div>
......@@ -1009,7 +1009,7 @@
">
<a href="/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/">
- From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i>
- From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1399,7 +1399,7 @@
">
<a href="/tutorial/notebooks/rotate_and_crop_images/">
- Rotate and Crop Images<i class='fa fa-battery-empty'></i>
- Rotate and Crop Images<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -2676,20 +2676,20 @@
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1551292994"></script>
<script src="/js/perfect-scrollbar.min.js?1551292994"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1551292994"></script>
<script src="/js/jquery.sticky.js?1551292994"></script>
<script src="/js/featherlight.min.js?1551292994"></script>
<script src="/js/html5shiv-printshiv.min.js?1551292994"></script>
<script src="/js/highlight.pack.js?1551292994"></script>
<script src="/js/clipboard.min.js?1551373722"></script>
<script src="/js/perfect-scrollbar.min.js?1551373722"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1551373722"></script>
<script src="/js/jquery.sticky.js?1551373722"></script>
<script src="/js/featherlight.min.js?1551373722"></script>
<script src="/js/html5shiv-printshiv.min.js?1551373722"></script>
<script src="/js/highlight.pack.js?1551373722"></script>