updated 2 tutorials

parent f2d5ab3d
...@@ -9,15 +9,15 @@ ...@@ -9,15 +9,15 @@
<title>404 Page not found</title> <title>404 Page not found</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1580176107" rel="stylesheet"> <link href="/css/fontawesome-all.min.css?1580997446" rel="stylesheet">
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<style> <style>
:root #header + #content > #left > #rlblock_left { :root #header + #content > #left > #rlblock_left {
......
...@@ -12,20 +12,20 @@ ...@@ -12,20 +12,20 @@
<title>Capabilities :: Documentation for Hugo Learn Theme</title> <title>Capabilities :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
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<style> <style>
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span> <span data-search-clear=""><i class="fas fa-times"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1580176107"></script> <script type="text/javascript" src="/js/lunr.min.js?1580997446"></script>
<script type="text/javascript" src="/js/auto-complete.js?1580176107"></script> <script type="text/javascript" src="/js/auto-complete.js?1580997446"></script>
<script type="text/javascript"> <script type="text/javascript">
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<script type="text/javascript" src="/js/search.js?1580176107"></script> <script type="text/javascript" src="/js/search.js?1580997446"></script>
</div> </div>
...@@ -3058,19 +3058,19 @@ ...@@ -3058,19 +3058,19 @@
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"> <div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div> <div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div> </div>
<script src="/js/clipboard.min.js?1580176107"></script> <script src="/js/clipboard.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.jquery.min.js?1580997446"></script>
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<script src="/js/featherlight.min.js?1580176107"></script> <script src="/js/featherlight.min.js?1580997446"></script>
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<script>hljs.initHighlightingOnLoad();</script> <script>hljs.initHighlightingOnLoad();</script>
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<script src="/js/learn.js?1580176107"></script> <script src="/js/learn.js?1580997446"></script>
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<script> <script>
mermaid.initialize({ startOnLoad: true }); mermaid.initialize({ startOnLoad: true });
</script> </script>
......
...@@ -12,20 +12,20 @@ ...@@ -12,20 +12,20 @@
<title>Categories :: Documentation for Hugo Learn Theme</title> <title>Categories :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1580176107" rel="stylesheet"> <link href="/css/fontawesome-all.min.css?1580997446" rel="stylesheet">
<link href="/css/hybrid.css?1580176107" rel="stylesheet"> <link href="/css/hybrid.css?1580997446" rel="stylesheet">
<link href="/css/featherlight.min.css?1580176107" rel="stylesheet"> <link href="/css/featherlight.min.css?1580997446" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1580176107" rel="stylesheet"> <link href="/css/perfect-scrollbar.min.css?1580997446" rel="stylesheet">
<link href="/css/auto-complete.css?1580176107" rel="stylesheet"> <link href="/css/auto-complete.css?1580997446" rel="stylesheet">
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<script src="/js/jquery-3.3.1.min.js?1580176107"></script> <script src="/js/jquery-3.3.1.min.js?1580997446"></script>
<style> <style>
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span> <span data-search-clear=""><i class="fas fa-times"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1580176107"></script> <script type="text/javascript" src="/js/lunr.min.js?1580997446"></script>
<script type="text/javascript" src="/js/auto-complete.js?1580176107"></script> <script type="text/javascript" src="/js/auto-complete.js?1580997446"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = ""; var baseurl = "";
</script> </script>
<script type="text/javascript" src="/js/search.js?1580176107"></script> <script type="text/javascript" src="/js/search.js?1580997446"></script>
</div> </div>
...@@ -3013,19 +3013,19 @@ ...@@ -3013,19 +3013,19 @@
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"> <div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div> <div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div> </div>
<script src="/js/clipboard.min.js?1580176107"></script> <script src="/js/clipboard.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.jquery.min.js?1580997446"></script>
<script src="/js/jquery.sticky.js?1580176107"></script> <script src="/js/jquery.sticky.js?1580997446"></script>
<script src="/js/featherlight.min.js?1580176107"></script> <script src="/js/featherlight.min.js?1580997446"></script>
<script src="/js/highlight.pack.js?1580176107"></script> <script src="/js/highlight.pack.js?1580997446"></script>
<script>hljs.initHighlightingOnLoad();</script> <script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1580176107"></script> <script src="/js/modernizr.custom-3.6.0.js?1580997446"></script>
<script src="/js/learn.js?1580176107"></script> <script src="/js/learn.js?1580997446"></script>
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<script src="/mermaid/mermaid.js?1580176107"></script> <script src="/mermaid/mermaid.js?1580997446"></script>
<script> <script>
mermaid.initialize({ startOnLoad: true }); mermaid.initialize({ startOnLoad: true });
</script> </script>
......
...@@ -12,20 +12,20 @@ ...@@ -12,20 +12,20 @@
<title>Contacts :: Documentation for Hugo Learn Theme</title> <title>Contacts :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1580176107" rel="stylesheet"> <link href="/css/fontawesome-all.min.css?1580997446" rel="stylesheet">
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<link href="/css/featherlight.min.css?1580176107" rel="stylesheet"> <link href="/css/featherlight.min.css?1580997446" rel="stylesheet">
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<link href="/css/theme.css?1580176107" rel="stylesheet"> <link href="/css/theme.css?1580997446" rel="stylesheet">
<link href="/css/hugo-theme.css?1580176107" rel="stylesheet"> <link href="/css/hugo-theme.css?1580997446" rel="stylesheet">
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<script src="/js/jquery-3.3.1.min.js?1580176107"></script> <script src="/js/jquery-3.3.1.min.js?1580997446"></script>
<style> <style>
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span> <span data-search-clear=""><i class="fas fa-times"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1580176107"></script> <script type="text/javascript" src="/js/lunr.min.js?1580997446"></script>
<script type="text/javascript" src="/js/auto-complete.js?1580176107"></script> <script type="text/javascript" src="/js/auto-complete.js?1580997446"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = ""; var baseurl = "";
</script> </script>
<script type="text/javascript" src="/js/search.js?1580176107"></script> <script type="text/javascript" src="/js/search.js?1580997446"></script>
</div> </div>
...@@ -3094,19 +3094,19 @@ ...@@ -3094,19 +3094,19 @@
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"> <div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div> <div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div> </div>
<script src="/js/clipboard.min.js?1580176107"></script> <script src="/js/clipboard.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.jquery.min.js?1580997446"></script>
<script src="/js/jquery.sticky.js?1580176107"></script> <script src="/js/jquery.sticky.js?1580997446"></script>
<script src="/js/featherlight.min.js?1580176107"></script> <script src="/js/featherlight.min.js?1580997446"></script>
<script src="/js/highlight.pack.js?1580176107"></script> <script src="/js/highlight.pack.js?1580997446"></script>
<script>hljs.initHighlightingOnLoad();</script> <script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1580176107"></script> <script src="/js/modernizr.custom-3.6.0.js?1580997446"></script>
<script src="/js/learn.js?1580176107"></script> <script src="/js/learn.js?1580997446"></script>
<script src="/js/hugo-learn.js?1580176107"></script> <script src="/js/hugo-learn.js?1580997446"></script>
<link href="/mermaid/mermaid.css?1580176107" rel="stylesheet" /> <link href="/mermaid/mermaid.css?1580997446" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1580176107"></script> <script src="/mermaid/mermaid.js?1580997446"></script>
<script> <script>
mermaid.initialize({ startOnLoad: true }); mermaid.initialize({ startOnLoad: true });
</script> </script>
......
...@@ -12,20 +12,20 @@ ...@@ -12,20 +12,20 @@
<title>Frequently Asked Questions :: Documentation for Hugo Learn Theme</title> <title>Frequently Asked Questions :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1580176107" rel="stylesheet"> <link href="/css/fontawesome-all.min.css?1580997446" rel="stylesheet">
<link href="/css/hybrid.css?1580176107" rel="stylesheet"> <link href="/css/hybrid.css?1580997446" rel="stylesheet">
<link href="/css/featherlight.min.css?1580176107" rel="stylesheet"> <link href="/css/featherlight.min.css?1580997446" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1580176107" rel="stylesheet"> <link href="/css/perfect-scrollbar.min.css?1580997446" rel="stylesheet">
<link href="/css/auto-complete.css?1580176107" rel="stylesheet"> <link href="/css/auto-complete.css?1580997446" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1580176107" rel="stylesheet"> <link href="/css/atom-one-dark-reasonable.css?1580997446" rel="stylesheet">
<link href="/css/theme.css?1580176107" rel="stylesheet"> <link href="/css/theme.css?1580997446" rel="stylesheet">
<link href="/css/hugo-theme.css?1580176107" rel="stylesheet"> <link href="/css/hugo-theme.css?1580997446" rel="stylesheet">
<link href="/css/theme-blue.css?1580176107" rel="stylesheet"> <link href="/css/theme-blue.css?1580997446" rel="stylesheet">
<script src="/js/jquery-3.3.1.min.js?1580176107"></script> <script src="/js/jquery-3.3.1.min.js?1580997446"></script>
<style> <style>
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span> <span data-search-clear=""><i class="fas fa-times"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1580176107"></script> <script type="text/javascript" src="/js/lunr.min.js?1580997446"></script>
<script type="text/javascript" src="/js/auto-complete.js?1580176107"></script> <script type="text/javascript" src="/js/auto-complete.js?1580997446"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = ""; var baseurl = "";
</script> </script>
<script type="text/javascript" src="/js/search.js?1580176107"></script> <script type="text/javascript" src="/js/search.js?1580997446"></script>
</div> </div>
...@@ -3442,19 +3442,19 @@ TIFF Directory at offset 0x800008 (8388616) ...@@ -3442,19 +3442,19 @@ TIFF Directory at offset 0x800008 (8388616)
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"> <div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div> <div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div> </div>
<script src="/js/clipboard.min.js?1580176107"></script> <script src="/js/clipboard.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.min.js?1580997446"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1580176107"></script> <script src="/js/perfect-scrollbar.jquery.min.js?1580997446"></script>
<script src="/js/jquery.sticky.js?1580176107"></script> <script src="/js/jquery.sticky.js?1580997446"></script>
<script src="/js/featherlight.min.js?1580176107"></script> <script src="/js/featherlight.min.js?1580997446"></script>
<script src="/js/highlight.pack.js?1580176107"></script> <script src="/js/highlight.pack.js?1580997446"></script>
<script>hljs.initHighlightingOnLoad();</script> <script>hljs.initHighlightingOnLoad();</script>
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<script> <script>
mermaid.initialize({ startOnLoad: true }); mermaid.initialize({ startOnLoad: true });
</script> </script>
......
...@@ -12,20 +12,20 @@ ...@@ -12,20 +12,20 @@
<title>Github Repositories :: Documentation for Hugo Learn Theme</title> <title>Github Repositories :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1580176107" rel="stylesheet"> <link href="/css/nucleus.css?1580997446" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1580176107" rel="stylesheet"> <link href="/css/fontawesome-all.min.css?1580997446" rel="stylesheet">
<link href="/css/hybrid.css?1580176107" rel="stylesheet"> <link href="/css/hybrid.css?1580997446" rel="stylesheet">
<link href="/css/featherlight.min.css?1580176107" rel="stylesheet"> <link href="/css/featherlight.min.css?1580997446" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1580176107" rel="stylesheet"> <link href="/css/perfect-scrollbar.min.css?1580997446" rel="stylesheet">
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<script src="/js/jquery-3.3.1.min.js?1580176107"></script> <script src="/js/jquery-3.3.1.min.js?1580997446"></script>
<style> <style>
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span> <span data-search-clear=""><i class="fas fa-times"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1580176107"></script> <script type="text/javascript" src="/js/lunr.min.js?1580997446"></script>
<script type="text/javascript" src="/js/auto-complete.js?1580176107"></script> <script type="text/javascript" src="/js/auto-complete.js?1580997446"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = ""; var baseurl = "";
</script> </script>
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...@@ -137,7 +137,7 @@ ...@@ -137,7 +137,7 @@
"title": "Notebooks Tutorials", "title": "Notebooks Tutorials",
"tags": [], "tags": [],
"description": "", "description": "",
"content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_all_images_selected combine_images_n_by_n create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images extract_evenly_spaced_files file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time gamma_filtering_tool images_and_metadata_extrapolation_matcher integrated_roi_counts_vs_file_name_and_time_stamp list_element_bragg_edges list_metadata_and_time_with_oncat list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch normalization_with_simplify_selection profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images sequential_combine_images_using_metadata template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n" "content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_all_images_selected combine_images_n_by_n create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images extract_evenly_spaced_files file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time gamma_filtering_tool images_and_metadata_extrapolation_matcher integrated_roi_counts_vs_file_name_and_time_stamp list_element_bragg_edges list_metadata_and_time_with_oncat list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch normalization_with_simplify_selection profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images sequential_combine_images_using_metadata template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
}, },
{ {
"uri": "/tutorial/notebooks/bin_images/", "uri": "/tutorial/notebooks/bin_images/",
...@@ -270,7 +270,7 @@ ...@@ -270,7 +270,7 @@
"title": "Extract Evenly Spaced Files", "title": "Extract Evenly Spaced Files",
"tags": [], "tags": [],
"description": "", "description": "",
"content": " Notebook name: extract_evenly_spaced_files.ipynb\nDescription This notebook allows you to copy into a new folder (extract) 1 every n files from the source folder. You will need to provide the skipping factor n in the notebook.\nExample:\nlet\u0026rsquo;s pretend you selected a folder (/Users/j35/my_data/) containing the following 21 images\nInput\n image001.fits\n image002.fits image003.fits image004.fits image005.fits image006.fits image007.fits image008.fits image009.fits image010.fits\n image011.fits image012.fits image013.fits image014.fits image015.fits image016.fits image017.fits image018.fits image019.fits image020.fits image021.fits and you decided to extract 1 every 5 files in the Desktop.\nThe notebook will create the folder called /Users/j35/Desktop/my_data_1_every_5_files and will copy the following files there\n image001.fits\n image006.fits image011.fits image016.fits image021.fits How does the notebook work? Select your IPTS Need help using the IPTS selector?\n Select the folder containing the images to extract Using the file selection tool, select the folder\nExtraction coefficient Select the number of images you want to skip. The notebook will give you live the list of files that will then be extracted.\nSelect output location Using the folder selection tool, select the location where you want to create the combine images.\nExtracting Once the output folder has been selected, the files will be automatically extracted (copied) into the output folder. Then a message will let you know when the process is done and where you can find the files copied.\n" "content": " Notebook name: extract_evenly_spaced_files.ipynb\nDescription This notebook allows you to copy into a new folder (extract) 1 every n files from the source folder. You will need to provide the skipping factor n in the notebook. You will also have the option to rename those files, as they are copied, in order to keep a linear increasing index starting at index 0.\nExample:\nlet\u0026rsquo;s pretend you selected a folder (/Users/j35/my_data/) containing the following 21 images\nInput\n image_001.fits\n image_002.fits image_003.fits image_004.fits image_005.fits image_006.fits image_007.fits image_008.fits image_009.fits image_010.fits\n image_011.fits image_012.fits image_013.fits image_014.fits image_015.fits image_016.fits image_017.fits image_018.fits image_019.fits image_020.fits image_021.fits and you decided to extract 1 every 5 files in the Desktop.\nThe notebook will create the folder called /Users/j35/Desktop/my_data_1_every_5_files and will copy the following files there\n image_001.fits\n image_006.fits image_011.fits image_016.fits image_021.fits or if you decide to rename them\n image_0000.fits\n image_0001.fits image_0002.fits image_0003.fits image_0004.fits How does the notebook work? Select your IPTS Need help using the IPTS selector?\n Select the folder containing the images to extract Using the file selection tool, select the folder\nExtraction coefficient Select the number of images you want to skip. The notebook will give you live the list of files that will then be extracted.\nRename or not Files This is where you have the option to rename of not the output files.\nSelect output location Using the folder selection tool, select the location where you want to create the combine images.\nExtracting Once the output folder has been selected, the files will be automatically extracted (copied) into the output folder. Then a message will let you know when the process is done and where you can find the files copied.\n"
}, },
{ {