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Commit ac7a4ce6 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
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removed duplicate notebook

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fr/tutorial/how_to_access_data/index.html
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fr/tutorial/index.html
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fr/vitrine/index.html
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github/index.html
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<title>Github Repositories :: Documentation for Hugo Learn Theme</title> <title>Github Repositories :: Documentation for Hugo Learn Theme</title>
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...@@ -977,32 +977,6 @@ ...@@ -977,32 +977,6 @@
<li data-nav-id="/tutorial/notebooks/fix_images_with_negative_pixels/" title="Fix Images with Negative Pixels" class="dd-item
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<li data-nav-id="/tutorial/notebooks/frederick_ipts/" title="Frederick IPTS" class="dd-item <li data-nav-id="/tutorial/notebooks/frederick_ipts/" title="Frederick IPTS" class="dd-item
...@@ -2665,22 +2639,6 @@ repositories hosting our programs</p> ...@@ -2665,22 +2639,6 @@ repositories hosting our programs</p>
...@@ -2707,20 +2665,20 @@ repositories hosting our programs</p> ...@@ -2707,20 +2665,20 @@ repositories hosting our programs</p>
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index.html
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<title>Neutron Imaging :: Documentation for Hugo Learn Theme</title> <title>Neutron Imaging :: Documentation for Hugo Learn Theme</title>
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:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
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...@@ -977,32 +977,6 @@ ...@@ -977,32 +977,6 @@
<li data-nav-id="/tutorial/notebooks/fix_images_with_negative_pixels/" title="Fix Images with Negative Pixels" class="dd-item
">
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<li data-nav-id="/tutorial/notebooks/frederick_ipts/" title="Frederick IPTS" class="dd-item <li data-nav-id="/tutorial/notebooks/frederick_ipts/" title="Frederick IPTS" class="dd-item
...@@ -2659,22 +2633,6 @@ web site, and always <strong>welcome your comments</strong> to improve it (conta ...@@ -2659,22 +2633,6 @@ web site, and always <strong>welcome your comments</strong> to improve it (conta
...@@ -2701,20 +2659,20 @@ web site, and always <strong>welcome your comments</strong> to improve it (conta ...@@ -2701,20 +2659,20 @@ web site, and always <strong>welcome your comments</strong> to improve it (conta
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index.json
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...@@ -116,7 +116,7 @@ ...@@ -116,7 +116,7 @@
"title": "Notebooks Tutorials", "title": "Notebooks Tutorials",
"tags": [], "tags": [],
"description": "", "description": "",
"content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images fix_images_with_negative_pixels frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n" "content": " bin_images bragg_edge_signal_vs_powder_peaks calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
}, },
{ {
"uri": "/tutorial/how_to_start_amira/", "uri": "/tutorial/how_to_start_amira/",
...@@ -265,13 +265,6 @@ ...@@ -265,13 +265,6 @@
"description": "", "description": "",
"content": " Notebook name: fix_images.ipynb\ndescription This notebook allows you to fix a set of images by replacing all the pixels having the same value, by another value. For example, you can replace all the Inf values by 0 or np.NaN.\nHere is the list of things you can fix:\n Inf values NaN values Negative values and here is the list of things you can replace with:\n np.NaN 0 Select your IPTS Need help using the IPTS selector?\n Select your images Using the files selection tool, select the images you want to fix.\nGive statistics In order to get an idea of what you need to correct, the next cell will display the following informations.\n name of the file total number of pixels in the image number and percentage of pixels with negative values number and percentage of pixels with infinite (negative or positive) values number and percentage of pixels with non defined (NaN) values A slider allows you to check those parameters for each of the images you loaded.\nDisplay images and histograms This is where you are able to visualize the corrections you are about to apply to the data. You can select which corrections you want to apply and see the effect on the image and its histogram.\nYou can make the following corrections\n Negative values -\u0026gt; np.NaN or 0 Infinite values -\u0026gt; np.NaN or 0 NaN values -\u0026gt; np.NaN or 0 where np.NaN is the numpy NaN.\nYou can slide through the images to display\n the raw image (top left corner) the raw histogram (top right corner) the new corrected image (bottom left corner) the new histogram (bottom right corner)\n Export images Using the folder selection tool to select the output location of all the images corrected.\n" "content": " Notebook name: fix_images.ipynb\ndescription This notebook allows you to fix a set of images by replacing all the pixels having the same value, by another value. For example, you can replace all the Inf values by 0 or np.NaN.\nHere is the list of things you can fix:\n Inf values NaN values Negative values and here is the list of things you can replace with:\n np.NaN 0 Select your IPTS Need help using the IPTS selector?\n Select your images Using the files selection tool, select the images you want to fix.\nGive statistics In order to get an idea of what you need to correct, the next cell will display the following informations.\n name of the file total number of pixels in the image number and percentage of pixels with negative values number and percentage of pixels with infinite (negative or positive) values number and percentage of pixels with non defined (NaN) values A slider allows you to check those parameters for each of the images you loaded.\nDisplay images and histograms This is where you are able to visualize the corrections you are about to apply to the data. You can select which corrections you want to apply and see the effect on the image and its histogram.\nYou can make the following corrections\n Negative values -\u0026gt; np.NaN or 0 Infinite values -\u0026gt; np.NaN or 0 NaN values -\u0026gt; np.NaN or 0 where np.NaN is the numpy NaN.\nYou can slide through the images to display\n the raw image (top left corner) the raw histogram (top right corner) the new corrected image (bottom left corner) the new histogram (bottom right corner)\n Export images Using the folder selection tool to select the output location of all the images corrected.\n"
}, },
{
"uri": "/tutorial/notebooks/fix_images_with_negative_pixels/",
"title": "Fix Images with Negative Pixels",
"tags": [],
"description": "",
"content": "Notebook name: fix_images_with_negative_pixels.ipynb\n"
},
{ {
"uri": "/tutorial/notebooks/frederick_ipts/", "uri": "/tutorial/notebooks/frederick_ipts/",
"title": "Frederick IPTS", "title": "Frederick IPTS",
......
links/index.html
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...@@ -13,19 +13,19 @@ ...@@ -13,19 +13,19 @@
<title>Links :: Documentation for Hugo Learn Theme</title> <title>Links :: Documentation for Hugo Learn Theme</title>
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:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span> <span data-search-clear=""><i class="fa fa-close"></i></span>
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...@@ -977,32 +977,6 @@ ...@@ -977,32 +977,6 @@
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<link href="/css/theme.css?1551187084" rel="stylesheet"> <link href="/css/theme.css?1551206667" rel="stylesheet">
<link href="/css/hugo-theme.css?1551187084" rel="stylesheet"> <link href="/css/hugo-theme.css?1551206667" rel="stylesheet">
<link href="/css/theme-blue.css?1551187084" rel="stylesheet"> <link href="/css/theme-blue.css?1551206667" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1551187084"></script> <script src="/js/jquery-2.x.min.js?1551206667"></script>
<style type="text/css"> <style type="text/css">
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span> <span data-search-clear=""><i class="fa fa-close"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1551187084"></script> <script type="text/javascript" src="/js/lunr.min.js?1551206667"></script>
<script type="text/javascript" src="/js/auto-complete.js?1551187084"></script> <script type="text/javascript" src="/js/auto-complete.js?1551206667"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = ""; var baseurl = "";
</script> </script>
<script type="text/javascript" src="/js/search.js?1551187084"></script> <script type="text/javascript" src="/js/search.js?1551206667"></script>
</div> </div>
...@@ -977,32 +977,6 @@ ...@@ -977,32 +977,6 @@