Commit a24a7e07 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

Updated tutorial metadata_overlapping_images.

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......@@ -9,15 +9,15 @@
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"title": "Notebooks Tutorials",
"tags": [],
"description": "",
"content": " A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z\nB bin_images bragg_edge_peak_fitting_evaluation bragg_edge_raw_sample_and_powder bragg_edge_normalization bragg_edge_profile bragg_edge_normalized_sample_and_powder \nC calibrated_transmission circular_profile_of_a_ring combine_folders combine_all_images_selected combine_images_n_by_n combine_images_without_outliers create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction \nD deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images dual_energy \nE extract_evenly_spaced_files extract_nexus_daslogs \nF file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time \nG gamma_filtering_tool group_images_by_cycle_for_panoramic_stitching \nH hfir_reactor_element_analysis \nI images_and_metadata_extrapolation_matcher integrated_roi_counts_vs_file_name_and_time_stamp \nL list_element_bragg_edges list_metadata_and_time_with_oncat list_tiff_metadata \nM mcp_chips_corrector metadata_ascii_parser metadata_overlapping_images \nN normalization normalization_with_simplify_selection \nO overlay_images \nP panoramic_stitching panoramic_stitching_for_tof profile \nR radial_profile registration rename_files resonance_imaging_experiment_vs_theory roi_selection_tool rotate_and_crop_images \nS sequential_combine_images_using_metadata \nT template_ui topaz_config_generator \nW water_intake_profile_calculator wave_front_dynamics \nTools File Selector Select IPTS \nExtra extract_sans_reductionlog_metadata \n Recently updated\n Levels of documentation\n"
"content": " A - B - C - D - E - F - G - H - I - J - K - L - M - N - O - P - Q - R - S - T - U - V - W - X - Y - Z\nB bin_images bragg_edge_peak_fitting_evaluation bragg_edge_raw_sample_and_powder bragg_edge_normalization bragg_edge_profile bragg_edge_normalized_sample_and_powder \nC calibrated_transmission circular_profile_of_a_ring combine_folders combine_all_images_selected combine_images_n_by_n combine_images_without_outliers create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction \nD deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images dual_energy \nE extract_evenly_spaced_files extract_nexus_daslogs \nF file_name_and_metadata_vs_time_stamp fix_images frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time \nG gamma_filtering_tool group_images_by_cycle_for_panoramic_stitching \nH hfir_reactor_element_analysis \nI images_and_metadata_extrapolation_matcher integrated_roi_counts_vs_file_name_and_time_stamp \nL list_element_bragg_edges list_metadata_and_time_with_oncat list_tiff_metadata \nM mcp_chips_corrector metadata_ascii_parser metadata_overlapping_images \nN normalization normalization_with_simplify_selection \nO overlay_images \nP panoramic_stitching panoramic_stitching_for_tof profile \nR radial_profile registration rename_files resonance_imaging_experiment_vs_theory roi_selection_tool rotate_and_crop_images \nS sequential_combine_images_using_metadata \nT template_ui topaz_config_generator \nW water_intake_profile_calculator wave_front_dynamics \nTools File Selector Select IPTS \nExtra extract_sans_reductionlog_metadata \n Recently updated\n Levels of documentation\n"
},
{
"uri": "/tutorial/notebooks/bin_images/",
......@@ -480,7 +480,7 @@
"title": "Metadata Overlapping Images",
"tags": [],
"description": "",
"content": " Notebook name: metadata_overlapping_images.ipynb\nDescription This notebook allows you to add a dimension scale to your images. You can also add a given metadata value for each of the images, or a graph showing the entire metadata plot and the current image metadata position on this graph.\n Scale added on top of image Metadata of current image Graph of all metadata and current metadata value Start the notebook If you need help accessing this notebook, check the How To \u0026gt; Start the python notebooks tutorial.\nHow to Use It? Select your IPTS Check the full tutorial here\nloading the Images Select the images you want to process using the File Selector. Once you click the Select button, the time stamp and the images will be automatically loaded. Wait for the progress bar to be done.\nNeed help using the File Selector?\n Profile UI Presentation How Does it Work ? Scale Select the scale option to add a dimension marker on top of the images. You can define:\n orientation of the scale size and label color thickness of the line position of the scale/label in the image Metadata When using metadata, you can display the current metadata as a string. But if you chose to, you can also display a graph showing the current file metadata position over the entire set of images metadata.\nText If you are working with a TIFF image, you will have the option of selecting one of the metadata available. Feel free to change the label of this one if needed. You can also define your own metadata by editing the table, or loading a file_vs_metadata file created by a notebook specially dedicated to this purpose (WORK IN PROGRESS).\nIt\u0026rsquo;s sometimes necessary to format the default metadata value (especially if you want to display the graph). To do so, right click in the right column of the table to reach the metadata string parser (string filter). Then define the first and last part of the string to remove Graph Advanced feature The Advanced Table \u0026hellip; button brings a new window that allows you to perform linear operation on various metadata at the same time and display the result of this operation.\nIn order to define a new complex formula:\n select a metadata to use via the top combo box click + button to add it to the math table change the coefficient in front of the new metadata if needed (default value is 1) keep adding new metadata the same way If a metadata needs to be removed from the equation, select the column and click -\nClick OK to validate the equation and to return to main interface.\nThe following animation demo how the advanced feature works.\nExport NB: Your application will look a little bit different from this animation\nYou can now export all your images. The PNG files created will be a copy of the current UI image preview.\n"
"content": " Notebook name: metadata_overlapping_images.ipynb\nDescription This notebook allows you to add a dimension scale to your images. You can also add a given metadata value for each of the images, or a graph showing the entire metadata plot and the current image metadata position on this graph.\n Scale added on top of image Metadata of current image Graph of all metadata and current metadata value Start the notebook If you need help accessing this notebook, check the How To \u0026gt; Start the python notebooks tutorial.\nHow to Use It? Select your IPTS Check the full tutorial here\nloading the Images Select the images you want to process using the File Selector. Once you click the Select button, the time stamp and the images will be automatically loaded. Wait for the progress bar to be done.\nNeed help using the File Selector?\n A progress bar will show you the loading progress. Make sure you wait for the busy signal to goes away before moving on to the next cell. Profile UI Presentation How Does it Work ? Scale Select the scale option to add a dimension marker on top of the images. You can define:\n orientation of the scale size and label color thickness of the line position of the scale/label in the image Metadata When using metadata, two features are offered: * you can display and personalize 1 or 2 metadata values on top of the plot * you can also plot a metadata versus file index, or versus another metadata\nWe are going to review each of those features one by one as they each come up with many settings to you define.\nDisplaying metadata in image If you want to display on each image 1 or 2 metadata values, use this feature. RIGHT CLICK inside the table and click Select Metadata \u0026hellip;.\nThis will bring the Select Metadata Toolbox.\nSelect first the metadata you want to use. Some of the metadata only have a value, others have a string attached to the value. You can either use the metadata as it is, or if you want to remove part of the string, use the String cleaning widgets to remove some text.\nIf the metadata, before or after cleaning, can be converted to a float, you have access to widgets that allow you to perform up to 2 linear operations on it. If any equation has been defined, this equation will be applied to this metadata for every single file selected and will be displayed in the final table once you click SELECT.\nSettings In order to customize the text, you can: * move it inside the image * change the size of the font * add a string BEFORE (prefix) and/or AFTER (suffix)\nPlot metadata in image This plot is used to see the value of the current file metadata over the entire stack of images selected. For example, in the case of a sample where the Temperature changes over time, this plot will show the current temperature of the image as well as the temperature of all the images.\nIt\u0026rsquo;s possible to change the default x-axis (file index) to any of the 2 metadata. RIGHT CLICK and click X-AXIS or Y-AXIS.\nYou can define the legend of each axis using the settings widgets.\nExport Table You can export the table into an ascii file. Click Export Table \u0026hellip; and select the output folder.\nExport You can now export all your images. The PNG files created will be a copy of the current UI image preview. Click Export Images \u0026hellip; at the bottom right and select the location where you want to create the images.\n"
},
{
"uri": "/",
......
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