Commit 658ebe74 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

Added bragg edge modeling tutorial

parent 24f4da9c
...@@ -13,19 +13,19 @@ ...@@ -13,19 +13,19 @@
<title>Frederick IPTS :: Documentation for Hugo Learn Theme</title> <title>Frederick IPTS :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1537817535" rel="stylesheet"> <link href="/css/nucleus.css?1538078396" rel="stylesheet">
<link href="/css/font-awesome.min.css?1537817535" rel="stylesheet"> <link href="/css/font-awesome.min.css?1538078396" rel="stylesheet">
<link href="/css/hybrid.css?1537817535" rel="stylesheet"> <link href="/css/hybrid.css?1538078396" rel="stylesheet">
<link href="/css/featherlight.min.css?1537817535" rel="stylesheet"> <link href="/css/featherlight.min.css?1538078396" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1537817535" rel="stylesheet"> <link href="/css/perfect-scrollbar.min.css?1538078396" rel="stylesheet">
<link href="/css/auto-complete.css?1537817535" rel="stylesheet"> <link href="/css/auto-complete.css?1538078396" rel="stylesheet">
<link href="/css/theme.css?1537817535" rel="stylesheet"> <link href="/css/theme.css?1538078396" rel="stylesheet">
<link href="/css/hugo-theme.css?1537817535" rel="stylesheet"> <link href="/css/hugo-theme.css?1538078396" rel="stylesheet">
<link href="/css/theme-blue.css?1537817535" rel="stylesheet"> <link href="/css/theme-blue.css?1538078396" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1537817535"></script> <script src="/js/jquery-2.x.min.js?1538078396"></script>
<style type="text/css"> <style type="text/css">
:root #header + #content > #left > #rlblock_left{ :root #header + #content > #left > #rlblock_left{
...@@ -60,14 +60,14 @@ ...@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span> <span data-search-clear=""><i class="fa fa-close"></i></span>
</div> </div>
<script type="text/javascript" src="/js/lunr.min.js?1537817535"></script> <script type="text/javascript" src="/js/lunr.min.js?1538078396"></script>
<script type="text/javascript" src="/js/auto-complete.js?1537817535"></script> <script type="text/javascript" src="/js/auto-complete.js?1538078396"></script>
<script type="text/javascript"> <script type="text/javascript">
var baseurl = "\/en"; var baseurl = "\/en";
</script> </script>
<script type="text/javascript" src="/js/search.js?1537817535"></script> <script type="text/javascript" src="/js/search.js?1538078396"></script>
</div> </div>
...@@ -247,13 +247,61 @@ ...@@ -247,13 +247,61 @@
<li data-nav-id="/en/faq/" title="Frequently Asked Questions" class="dd-item
">
<a href="/en/faq/">
<b>3. </b>Frequently Asked Questions
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/links/" title="Links" class="dd-item
">
<a href="/en/links/">
<b>4. </b>Links
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/tutorial/" title="Tutorials" class="dd-item <li data-nav-id="/en/tutorial/" title="Tutorials" class="dd-item
parent parent
"> ">
<a href="/en/tutorial/"> <a href="/en/tutorial/">
<b>3. </b>Tutorials <b>5. </b>Tutorials
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -276,13 +324,13 @@ ...@@ -276,13 +324,13 @@
<li data-nav-id="/en/tutorial/how_to_run_imars3d/" title="Do a CT reconstruction" class="dd-item <li data-nav-id="/en/tutorial/how_to_access_data/" title="Access your data" class="dd-item
"> ">
<a href="/en/tutorial/how_to_run_imars3d/"> <a href="/en/tutorial/how_to_access_data/">
Do a CT reconstruction <b>a. </b>Access your data
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -302,13 +350,13 @@ ...@@ -302,13 +350,13 @@
<li data-nav-id="/en/tutorial/how_to_access_data/" title="Access your data" class="dd-item <li data-nav-id="/en/tutorial/how_to_access_computer/" title="Connect to our computer" class="dd-item
"> ">
<a href="/en/tutorial/how_to_access_data/"> <a href="/en/tutorial/how_to_access_computer/">
Access your data <b>b. </b>Connect to our computer
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -328,13 +376,13 @@ ...@@ -328,13 +376,13 @@
<li data-nav-id="/en/tutorial/how_to_access_computer/" title="Connect to our computer" class="dd-item <li data-nav-id="/en/tutorial/how_to_start_notebooks/" title="Start the python notebooks" class="dd-item
"> ">
<a href="/en/tutorial/how_to_access_computer/"> <a href="/en/tutorial/how_to_start_notebooks/">
Connect to our computer <b>c. </b>Start the python notebooks
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -354,13 +402,13 @@ ...@@ -354,13 +402,13 @@
<li data-nav-id="/en/tutorial/how_to_start_notebooks/" title="Start the python notebooks" class="dd-item <li data-nav-id="/en/tutorial/how_to_run_notebooks/" title="Run a jupyter notebook" class="dd-item
"> ">
<a href="/en/tutorial/how_to_start_notebooks/"> <a href="/en/tutorial/how_to_run_notebooks/">
Start the python notebooks <b>d. </b>Run a jupyter notebook
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -380,13 +428,39 @@ ...@@ -380,13 +428,39 @@
<li data-nav-id="/en/tutorial/how_to_run_notebooks/" title="Run a jupyter notebook" class="dd-item <li data-nav-id="/en/tutorial/how_to_run_imars3d/" title="Do a CT reconstruction" class="dd-item
"> ">
<a href="/en/tutorial/how_to_run_notebooks/"> <a href="/en/tutorial/how_to_run_imars3d/">
Run a jupyter notebook <b>e. </b>Do a CT reconstruction
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/tutorial/how_to_do_bragg_edge_modeling/" title="Bragg Edge Modeling" class="dd-item
">
<a href="/en/tutorial/how_to_do_bragg_edge_modeling/">
<b>f. </b>Bragg Edge Modeling
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -412,7 +486,7 @@ ...@@ -412,7 +486,7 @@
"> ">
<a href="/en/tutorial/notebooks/"> <a href="/en/tutorial/notebooks/">
Notebooks Tutorials <b>g. </b>Notebooks Tutorials
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -441,7 +515,7 @@ ...@@ -441,7 +515,7 @@
"> ">
<a href="/en/tutorial/notebooks/calculate_water_intake_profile/"> <a href="/en/tutorial/notebooks/calculate_water_intake_profile/">
Calculate Water Intake <i class='fa fa-battery-empty'></i> - Calculate Water Intake <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -467,7 +541,7 @@ ...@@ -467,7 +541,7 @@
"> ">
<a href="/en/tutorial/notebooks/calibrated_transmission/"> <a href="/en/tutorial/notebooks/calibrated_transmission/">
Calibrated Transmission <i class='fa fa-battery-full'></i> - Calibrated Transmission <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -493,7 +567,7 @@ ...@@ -493,7 +567,7 @@
"> ">
<a href="/en/tutorial/notebooks/combine_folders/"> <a href="/en/tutorial/notebooks/combine_folders/">
Combine Folders <i class='fa fa-battery-empty'></i> - Combine Folders <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -519,7 +593,7 @@ ...@@ -519,7 +593,7 @@
"> ">
<a href="/en/tutorial/notebooks/combine_images/"> <a href="/en/tutorial/notebooks/combine_images/">
Combine Images <i class='fa fa-battery-empty'></i> - Combine Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -545,7 +619,7 @@ ...@@ -545,7 +619,7 @@
"> ">
<a href="/en/tutorial/notebooks/create_list_of_file_name_vs_time_stamp/"> <a href="/en/tutorial/notebooks/create_list_of_file_name_vs_time_stamp/">
Create List of Files of Names vs Time Stamp <i class='fa fa-battery-full'></i> - Create List of Files of Names vs Time Stamp <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -571,7 +645,7 @@ ...@@ -571,7 +645,7 @@
"> ">
<a href="/en/tutorial/notebooks/cylindrical_geometry_correction/"> <a href="/en/tutorial/notebooks/cylindrical_geometry_correction/">
Cylindrical Geometry Correction<i class='fa fa-battery-empty'></i> - Cylindrical Geometry Correction<i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -597,7 +671,7 @@ ...@@ -597,7 +671,7 @@
"> ">
<a href="/en/tutorial/notebooks/deal_files/"> <a href="/en/tutorial/notebooks/deal_files/">
Deal Files <i class='fa fa-battery-empty'></i> - Deal Files <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -623,7 +697,7 @@ ...@@ -623,7 +697,7 @@
"> ">
<a href="/en/tutorial/notebooks/display_counts_of_region_vs_stack/"> <a href="/en/tutorial/notebooks/display_counts_of_region_vs_stack/">
Display Counts of ROI vs Stack <i class='fa fa-battery-2'></i> - Display Counts of ROI vs Stack <i class='fa fa-battery-2'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -649,7 +723,7 @@ ...@@ -649,7 +723,7 @@
"> ">
<a href="/en/tutorial/notebooks/display_file_names_vs_time_stamp/"> <a href="/en/tutorial/notebooks/display_file_names_vs_time_stamp/">
Display File Names vs Time Stamp <i class='fa fa-battery-full'></i> - Display File Names vs Time Stamp <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -675,7 +749,7 @@ ...@@ -675,7 +749,7 @@
"> ">
<a href="/en/tutorial/notebooks/display_and_export_images_with_metadata_profile/"> <a href="/en/tutorial/notebooks/display_and_export_images_with_metadata_profile/">
Display Images and Metadata <i class='fa fa-battery-empty'></i> - Display Images and Metadata <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -701,7 +775,7 @@ ...@@ -701,7 +775,7 @@
"> ">
<a href="/en/tutorial/notebooks/display_integrated_stack_of_images/"> <a href="/en/tutorial/notebooks/display_integrated_stack_of_images/">
Display Integrated Images <i class='fa fa-battery-empty'></i> - Display Integrated Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -727,7 +801,7 @@ ...@@ -727,7 +801,7 @@
"> ">
<a href="/en/tutorial/notebooks/display_and_export_images_with_timestamp/"> <a href="/en/tutorial/notebooks/display_and_export_images_with_timestamp/">
Display and Export Images <i class='fa fa-battery-empty'></i> - Display and Export Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -753,7 +827,7 @@ ...@@ -753,7 +827,7 @@
"> ">
<a href="/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/"> <a href="/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/">
File Name and Metadata vs Timestamp <i class='fa fa-battery-empty'></i> - File Name and Metadata vs Timestamp <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -779,7 +853,7 @@ ...@@ -779,7 +853,7 @@
"> ">
<a href="/en/tutorial/notebooks/file_selector/"> <a href="/en/tutorial/notebooks/file_selector/">
File Selector<i class='fa fa-battery-full'></i> - File Selector<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -805,7 +879,7 @@ ...@@ -805,7 +879,7 @@
"> ">
<a href="/en/tutorial/notebooks/fix_images/"> <a href="/en/tutorial/notebooks/fix_images/">
Fix Images <i class='fa fa-battery-empty'></i> - Fix Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -831,7 +905,7 @@ ...@@ -831,7 +905,7 @@
"> ">
<a href="/en/tutorial/notebooks/fix_images_with_negative_pixels/"> <a href="/en/tutorial/notebooks/fix_images_with_negative_pixels/">
Fix Images with Negative Pixels <i class='fa fa-battery-empty'></i> - Fix Images with Negative Pixels <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -857,7 +931,7 @@ ...@@ -857,7 +931,7 @@
"> ">
<a href="/en/tutorial/notebooks/frederick_ipts/"> <a href="/en/tutorial/notebooks/frederick_ipts/">
Frederick IPTS <i class='fa fa-battery-2'></i> - Frederick IPTS <i class='fa fa-battery-2'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -883,7 +957,7 @@ ...@@ -883,7 +957,7 @@
"> ">
<a href="/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/"> <a href="/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/">
From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i> - From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -909,7 +983,7 @@ ...@@ -909,7 +983,7 @@
"> ">
<a href="/en/tutorial/notebooks/from_attenuation_to_concentration/"> <a href="/en/tutorial/notebooks/from_attenuation_to_concentration/">
From Attenuation to Concentration<i class='fa fa-battery-full'></i> - From Attenuation to Concentration<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -935,7 +1009,7 @@ ...@@ -935,7 +1009,7 @@
"> ">
<a href="/en/tutorial/notebooks/gamma_filtering_tool/"> <a href="/en/tutorial/notebooks/gamma_filtering_tool/">
Gamma Filtering Tool <i class='fa fa-battery-full'></i> - Gamma Filtering Tool <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -961,7 +1035,7 @@ ...@@ -961,7 +1035,7 @@
"> ">
<a href="/en/tutorial/notebooks/list_tiff_metadata/"> <a href="/en/tutorial/notebooks/list_tiff_metadata/">
List TIFF Metadata <i class='fa fa-battery-full'></i> - List TIFF Metadata <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -987,7 +1061,7 @@ ...@@ -987,7 +1061,7 @@
"> ">
<a href="/en/tutorial/notebooks/locate_pixels/"> <a href="/en/tutorial/notebooks/locate_pixels/">
Locate Pixels <i class='fa fa-battery-empty'></i> - Locate Pixels <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -1013,7 +1087,7 @@ ...@@ -1013,7 +1087,7 @@
"> ">
<a href="/en/tutorial/notebooks/metadata_overlapping_images/"> <a href="/en/tutorial/notebooks/metadata_overlapping_images/">
Metatadata Overlapping Images<i class='fa fa-battery-full'></i> - Metatadata Overlapping Images<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -1039,7 +1113,7 @@ ...@@ -1039,7 +1113,7 @@
"> ">
<a href="/en/tutorial/notebooks/normalization/"> <a href="/en/tutorial/notebooks/normalization/">
Normalization<i class='fa fa-battery-full'></i> - Normalization<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i> <i class="fa fa-check read-icon"></i>
...@@ -1065,7 +1139,7 @@ ...@@ -1065,7 +1139,7 @@
"> ">
<a href="/en/tutorial/notebooks/normalization_batch/"> <a href="/en/tutorial/notebooks/normalization_batch/">
Normalization_batch<i class='fa fa-battery-full'></i> - Normalization_batch<i class='fa fa-battery-full'></i>