Commit 658ebe74 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

Added bragg edge modeling tutorial

parent 24f4da9c
......@@ -13,19 +13,19 @@
<title>Frederick IPTS :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1537817535" rel="stylesheet">
<link href="/css/font-awesome.min.css?1537817535" rel="stylesheet">
<link href="/css/hybrid.css?1537817535" rel="stylesheet">
<link href="/css/featherlight.min.css?1537817535" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1537817535" rel="stylesheet">
<link href="/css/auto-complete.css?1537817535" rel="stylesheet">
<link href="/css/theme.css?1537817535" rel="stylesheet">
<link href="/css/hugo-theme.css?1537817535" rel="stylesheet">
<link href="/css/nucleus.css?1538078396" rel="stylesheet">
<link href="/css/font-awesome.min.css?1538078396" rel="stylesheet">
<link href="/css/hybrid.css?1538078396" rel="stylesheet">
<link href="/css/featherlight.min.css?1538078396" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1538078396" rel="stylesheet">
<link href="/css/auto-complete.css?1538078396" rel="stylesheet">
<link href="/css/theme.css?1538078396" rel="stylesheet">
<link href="/css/hugo-theme.css?1538078396" rel="stylesheet">
<link href="/css/theme-blue.css?1537817535" rel="stylesheet">
<link href="/css/theme-blue.css?1538078396" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1537817535"></script>
<script src="/js/jquery-2.x.min.js?1538078396"></script>
<style type="text/css">
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1537817535"></script>
<script type="text/javascript" src="/js/auto-complete.js?1537817535"></script>
<script type="text/javascript" src="/js/lunr.min.js?1538078396"></script>
<script type="text/javascript" src="/js/auto-complete.js?1538078396"></script>
<script type="text/javascript">
var baseurl = "\/en";
</script>
<script type="text/javascript" src="/js/search.js?1537817535"></script>
<script type="text/javascript" src="/js/search.js?1538078396"></script>
</div>
......@@ -247,13 +247,61 @@
<li data-nav-id="/en/faq/" title="Frequently Asked Questions" class="dd-item
">
<a href="/en/faq/">
<b>3. </b>Frequently Asked Questions
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/links/" title="Links" class="dd-item
">
<a href="/en/links/">
<b>4. </b>Links
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/tutorial/" title="Tutorials" class="dd-item
parent
">
<a href="/en/tutorial/">
<b>3. </b>Tutorials
<b>5. </b>Tutorials
<i class="fa fa-check read-icon"></i>
......@@ -276,13 +324,13 @@
<li data-nav-id="/en/tutorial/how_to_run_imars3d/" title="Do a CT reconstruction" class="dd-item
<li data-nav-id="/en/tutorial/how_to_access_data/" title="Access your data" class="dd-item
">
<a href="/en/tutorial/how_to_run_imars3d/">
Do a CT reconstruction
<a href="/en/tutorial/how_to_access_data/">
<b>a. </b>Access your data
<i class="fa fa-check read-icon"></i>
......@@ -302,13 +350,13 @@
<li data-nav-id="/en/tutorial/how_to_access_data/" title="Access your data" class="dd-item
<li data-nav-id="/en/tutorial/how_to_access_computer/" title="Connect to our computer" class="dd-item
">
<a href="/en/tutorial/how_to_access_data/">
Access your data
<a href="/en/tutorial/how_to_access_computer/">
<b>b. </b>Connect to our computer
<i class="fa fa-check read-icon"></i>
......@@ -328,13 +376,13 @@
<li data-nav-id="/en/tutorial/how_to_access_computer/" title="Connect to our computer" class="dd-item
<li data-nav-id="/en/tutorial/how_to_start_notebooks/" title="Start the python notebooks" class="dd-item
">
<a href="/en/tutorial/how_to_access_computer/">
Connect to our computer
<a href="/en/tutorial/how_to_start_notebooks/">
<b>c. </b>Start the python notebooks
<i class="fa fa-check read-icon"></i>
......@@ -354,13 +402,13 @@
<li data-nav-id="/en/tutorial/how_to_start_notebooks/" title="Start the python notebooks" class="dd-item
<li data-nav-id="/en/tutorial/how_to_run_notebooks/" title="Run a jupyter notebook" class="dd-item
">
<a href="/en/tutorial/how_to_start_notebooks/">
Start the python notebooks
<a href="/en/tutorial/how_to_run_notebooks/">
<b>d. </b>Run a jupyter notebook
<i class="fa fa-check read-icon"></i>
......@@ -380,13 +428,39 @@
<li data-nav-id="/en/tutorial/how_to_run_notebooks/" title="Run a jupyter notebook" class="dd-item
<li data-nav-id="/en/tutorial/how_to_run_imars3d/" title="Do a CT reconstruction" class="dd-item
">
<a href="/en/tutorial/how_to_run_notebooks/">
Run a jupyter notebook
<a href="/en/tutorial/how_to_run_imars3d/">
<b>e. </b>Do a CT reconstruction
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/tutorial/how_to_do_bragg_edge_modeling/" title="Bragg Edge Modeling" class="dd-item
">
<a href="/en/tutorial/how_to_do_bragg_edge_modeling/">
<b>f. </b>Bragg Edge Modeling
<i class="fa fa-check read-icon"></i>
......@@ -412,7 +486,7 @@
">
<a href="/en/tutorial/notebooks/">
Notebooks Tutorials
<b>g. </b>Notebooks Tutorials
<i class="fa fa-check read-icon"></i>
......@@ -441,7 +515,7 @@
">
<a href="/en/tutorial/notebooks/calculate_water_intake_profile/">
Calculate Water Intake <i class='fa fa-battery-empty'></i>
- Calculate Water Intake <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -467,7 +541,7 @@
">
<a href="/en/tutorial/notebooks/calibrated_transmission/">
Calibrated Transmission <i class='fa fa-battery-full'></i>
- Calibrated Transmission <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -493,7 +567,7 @@
">
<a href="/en/tutorial/notebooks/combine_folders/">
Combine Folders <i class='fa fa-battery-empty'></i>
- Combine Folders <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -519,7 +593,7 @@
">
<a href="/en/tutorial/notebooks/combine_images/">
Combine Images <i class='fa fa-battery-empty'></i>
- Combine Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -545,7 +619,7 @@
">
<a href="/en/tutorial/notebooks/create_list_of_file_name_vs_time_stamp/">
Create List of Files of Names vs Time Stamp <i class='fa fa-battery-full'></i>
- Create List of Files of Names vs Time Stamp <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -571,7 +645,7 @@
">
<a href="/en/tutorial/notebooks/cylindrical_geometry_correction/">
Cylindrical Geometry Correction<i class='fa fa-battery-empty'></i>
- Cylindrical Geometry Correction<i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -597,7 +671,7 @@
">
<a href="/en/tutorial/notebooks/deal_files/">
Deal Files <i class='fa fa-battery-empty'></i>
- Deal Files <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -623,7 +697,7 @@
">
<a href="/en/tutorial/notebooks/display_counts_of_region_vs_stack/">
Display Counts of ROI vs Stack <i class='fa fa-battery-2'></i>
- Display Counts of ROI vs Stack <i class='fa fa-battery-2'></i>
<i class="fa fa-check read-icon"></i>
......@@ -649,7 +723,7 @@
">
<a href="/en/tutorial/notebooks/display_file_names_vs_time_stamp/">
Display File Names vs Time Stamp <i class='fa fa-battery-full'></i>
- Display File Names vs Time Stamp <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -675,7 +749,7 @@
">
<a href="/en/tutorial/notebooks/display_and_export_images_with_metadata_profile/">
Display Images and Metadata <i class='fa fa-battery-empty'></i>
- Display Images and Metadata <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -701,7 +775,7 @@
">
<a href="/en/tutorial/notebooks/display_integrated_stack_of_images/">
Display Integrated Images <i class='fa fa-battery-empty'></i>
- Display Integrated Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -727,7 +801,7 @@
">
<a href="/en/tutorial/notebooks/display_and_export_images_with_timestamp/">
Display and Export Images <i class='fa fa-battery-empty'></i>
- Display and Export Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -753,7 +827,7 @@
">
<a href="/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/">
File Name and Metadata vs Timestamp <i class='fa fa-battery-empty'></i>
- File Name and Metadata vs Timestamp <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -779,7 +853,7 @@
">
<a href="/en/tutorial/notebooks/file_selector/">
File Selector<i class='fa fa-battery-full'></i>
- File Selector<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -805,7 +879,7 @@
">
<a href="/en/tutorial/notebooks/fix_images/">
Fix Images <i class='fa fa-battery-empty'></i>
- Fix Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -831,7 +905,7 @@
">
<a href="/en/tutorial/notebooks/fix_images_with_negative_pixels/">
Fix Images with Negative Pixels <i class='fa fa-battery-empty'></i>
- Fix Images with Negative Pixels <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -857,7 +931,7 @@
">
<a href="/en/tutorial/notebooks/frederick_ipts/">
Frederick IPTS <i class='fa fa-battery-2'></i>
- Frederick IPTS <i class='fa fa-battery-2'></i>
<i class="fa fa-check read-icon"></i>
......@@ -883,7 +957,7 @@
">
<a href="/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/">
From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i>
- From .dsc Time Info to ASCII File vs Time <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -909,7 +983,7 @@
">
<a href="/en/tutorial/notebooks/from_attenuation_to_concentration/">
From Attenuation to Concentration<i class='fa fa-battery-full'></i>
- From Attenuation to Concentration<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -935,7 +1009,7 @@
">
<a href="/en/tutorial/notebooks/gamma_filtering_tool/">
Gamma Filtering Tool <i class='fa fa-battery-full'></i>
- Gamma Filtering Tool <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -961,7 +1035,7 @@
">
<a href="/en/tutorial/notebooks/list_tiff_metadata/">
List TIFF Metadata <i class='fa fa-battery-full'></i>
- List TIFF Metadata <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -987,7 +1061,7 @@
">
<a href="/en/tutorial/notebooks/locate_pixels/">
Locate Pixels <i class='fa fa-battery-empty'></i>
- Locate Pixels <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1013,7 +1087,7 @@
">
<a href="/en/tutorial/notebooks/metadata_overlapping_images/">
Metatadata Overlapping Images<i class='fa fa-battery-full'></i>
- Metatadata Overlapping Images<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1039,7 +1113,7 @@
">
<a href="/en/tutorial/notebooks/normalization/">
Normalization<i class='fa fa-battery-full'></i>
- Normalization<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1065,7 +1139,7 @@
">
<a href="/en/tutorial/notebooks/normalization_batch/">
Normalization_batch<i class='fa fa-battery-full'></i>
- Normalization_batch<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1091,7 +1165,7 @@
">
<a href="/en/tutorial/notebooks/profile/">
Profile<i class='fa fa-battery-full'></i>
- Profile<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1117,7 +1191,7 @@
">
<a href="/en/tutorial/notebooks/radial_profile/">
Radial Profile<i class='fa fa-battery-full'></i>
- Radial Profile<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1143,7 +1217,7 @@
">
<a href="/en/tutorial/notebooks/bin_images/">
Rebin Images <i class='fa fa-battery-empty'></i>
- Rebin Images <i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1169,7 +1243,7 @@
">
<a href="/en/tutorial/notebooks/registration/">
Registration <i class='fa fa-battery-full'></i>
- Registration <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1195,7 +1269,7 @@
">
<a href="/en/tutorial/notebooks/rename_files/">
Rename Files <i class='fa fa-battery-full'></i>
- Rename Files <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1221,7 +1295,7 @@
">
<a href="/en/tutorial/notebooks/resonance_imaging_experiment_vs_theory/">
Resonance Imaging Experiment vs Theory<i class='fa fa-battery-empty'></i>
- Resonance Imaging Experiment vs Theory<i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1247,7 +1321,7 @@
">
<a href="/en/tutorial/notebooks/rotate_and_crop_images/">
Rotate and Crop Images<i class='fa fa-battery-empty'></i>
- Rotate and Crop Images<i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1273,7 +1347,7 @@
">
<a href="/en/tutorial/notebooks/select_ipts/">
Select IPTS<i class='fa fa-battery-full'></i>
- Select IPTS<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1299,7 +1373,7 @@
">
<a href="/en/tutorial/notebooks/topaz_config_generator/">
TOPAZ config file generator<i class='fa fa-battery-full'></i>
- TOPAZ config file generator<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1325,7 +1399,7 @@
">
<a href="/en/tutorial/notebooks/template_ui/">
Template UI Builder<i class='fa fa-battery-empty'></i>
- Template UI Builder<i class='fa fa-battery-empty'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1351,7 +1425,7 @@
">
<a href="/en/tutorial/notebooks/water_intake_profile_calculator/">
Water Intake Profile Calculator<i class='fa fa-battery-full'></i>
- Water Intake Profile Calculator<i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -1380,13 +1454,13 @@
<li data-nav-id="/en/tutorial/how_to_other/" title="More ..." class="dd-item
<li data-nav-id="/en/tutorial/how_to_other/" title="8. More ..." class="dd-item
">
<a href="/en/tutorial/how_to_other/">
More ...
8. More ...
<i class="fa fa-check read-icon"></i>
......@@ -1407,54 +1481,6 @@
<li data-nav-id="/en/faq/" title="Frequently Asked Questions" class="dd-item
">
<a href="/en/faq/">
<b>4. </b>Frequently Asked Questions
<i class="fa fa-check read-icon"></i>
</a>
</li>
<li data-nav-id="/en/links/" title="Links" class="dd-item
">
<a href="/en/links/">
<b>5. </b>Links
<i class="fa fa-check read-icon"></i>
</a>
</li>
</ul>
......@@ -1810,25 +1836,22 @@ browse your data using the groups extracted from the previous step.</p>