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@@ -2831,6 +2831,9 @@ button. Just select the output location. The file name created will be based on
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diff --git a/en/tutorial/notebooks/combine_images/index.html b/en/tutorial/notebooks/combine_images/index.html
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diff --git a/en/tutorial/notebooks/create_list_of_file_name_vs_time_stamp/index.html b/en/tutorial/notebooks/create_list_of_file_name_vs_time_stamp/index.html
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@@ -2821,6 +2821,9 @@ to learn how to use the file selector tool.
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diff --git a/en/tutorial/notebooks/cylindrical_geometry_correction/index.html b/en/tutorial/notebooks/cylindrical_geometry_correction/index.html
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diff --git a/en/tutorial/notebooks/deal_files/index.html b/en/tutorial/notebooks/deal_files/index.html
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diff --git a/en/tutorial/notebooks/display_and_export_images_with_metadata_profile/index.html b/en/tutorial/notebooks/display_and_export_images_with_metadata_profile/index.html
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diff --git a/en/tutorial/notebooks/display_and_export_images_with_timestamp/index.html b/en/tutorial/notebooks/display_and_export_images_with_timestamp/index.html
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@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/display_counts_of_region_vs_stack/index.html b/en/tutorial/notebooks/display_counts_of_region_vs_stack/index.html
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--- a/en/tutorial/notebooks/display_counts_of_region_vs_stack/index.html
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@@ -2806,6 +2806,9 @@ of the interface.
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diff --git a/en/tutorial/notebooks/display_file_names_vs_time_stamp/index.html b/en/tutorial/notebooks/display_file_names_vs_time_stamp/index.html
index 50d71b46a9ce01da5a127c24799d1fb9b7730978..860670b3e93c5b673b89a134926dd0d4ce246245 100644
--- a/en/tutorial/notebooks/display_file_names_vs_time_stamp/index.html
+++ b/en/tutorial/notebooks/display_file_names_vs_time_stamp/index.html
@@ -2812,6 +2812,9 @@ and on the right side, the absolute time offset in seconds.
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diff --git a/en/tutorial/notebooks/display_integrated_stack_of_images/index.html b/en/tutorial/notebooks/display_integrated_stack_of_images/index.html
index 6365ecbf2a76a4ad17c58aea1e8e3618555a599b..eea48119b1ba198eedc2148ea3ff8a94f9bc43ad 100644
--- a/en/tutorial/notebooks/display_integrated_stack_of_images/index.html
+++ b/en/tutorial/notebooks/display_integrated_stack_of_images/index.html
@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/index.html b/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/index.html
index 24bbedd896ce0b9983f9cad9f602f5344c0be709..caa05d5514d53acf97642d44cfda05bf4547234f 100644
--- a/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/index.html
+++ b/en/tutorial/notebooks/file_name_and_metadata_vs_time_stamp/index.html
@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/file_selector/index.html b/en/tutorial/notebooks/file_selector/index.html
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+++ b/en/tutorial/notebooks/file_selector/index.html
@@ -2797,6 +2797,9 @@
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diff --git a/en/tutorial/notebooks/fix_images/index.html b/en/tutorial/notebooks/fix_images/index.html
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+++ b/en/tutorial/notebooks/fix_images/index.html
@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/fix_images_with_negative_pixels/index.html b/en/tutorial/notebooks/fix_images_with_negative_pixels/index.html
index a745c33e4072861292c852c56064dbb50c092170..32012712f258457bae64757b0b33634ae34b8c48 100644
--- a/en/tutorial/notebooks/fix_images_with_negative_pixels/index.html
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@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/frederick_ipts/index.html b/en/tutorial/notebooks/frederick_ipts/index.html
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--- a/en/tutorial/notebooks/frederick_ipts/index.html
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diff --git a/en/tutorial/notebooks/from_attenuation_to_concentration/index.html b/en/tutorial/notebooks/from_attenuation_to_concentration/index.html
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--- a/en/tutorial/notebooks/from_attenuation_to_concentration/index.html
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@@ -2812,6 +2812,9 @@ output folder will be data_03_concentration
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diff --git a/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/index.html b/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/index.html
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+++ b/en/tutorial/notebooks/from_dsc_time_info_to_ascii_file_vs_time/index.html
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diff --git a/en/tutorial/notebooks/gamma_filtering_tool/index.html b/en/tutorial/notebooks/gamma_filtering_tool/index.html
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--- a/en/tutorial/notebooks/gamma_filtering_tool/index.html
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@@ -2833,6 +2833,9 @@ the gamma are located.
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diff --git a/en/tutorial/notebooks/index.html b/en/tutorial/notebooks/index.html
index e2a1b7a935bfe1a42e546ed1cfcfa92496fc6e38..601e85b43c2b1c572cad7ff3b6c5294e45c153de 100644
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@@ -2776,6 +2776,9 @@
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diff --git a/en/tutorial/notebooks/integrated_roi_counts_vs_file_name_and_time_stamp/index.html b/en/tutorial/notebooks/integrated_roi_counts_vs_file_name_and_time_stamp/index.html
index 335f39c0b1dac4e847e6df381641db2169d6ea40..ba083e233bfc5af12170903fa8c4e2672017be9b 100644
--- a/en/tutorial/notebooks/integrated_roi_counts_vs_file_name_and_time_stamp/index.html
+++ b/en/tutorial/notebooks/integrated_roi_counts_vs_file_name_and_time_stamp/index.html
@@ -2836,6 +2836,9 @@ output file created.
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diff --git a/en/tutorial/notebooks/list_tiff_metadata/index.html b/en/tutorial/notebooks/list_tiff_metadata/index.html
index d6d612be65ebbab468cf07d995dc59ddcff2e56b..d948dc3c8a485142345520c6fb084b0d1b009924 100644
--- a/en/tutorial/notebooks/list_tiff_metadata/index.html
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@@ -2802,6 +2802,9 @@ Select the one you want to output.
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diff --git a/en/tutorial/notebooks/locate_pixels/index.html b/en/tutorial/notebooks/locate_pixels/index.html
index c558113469b4e522f97ecfd160668a55b98b18c0..2aa3ceac88950c7fc86a7bee4adc32b8d88c5514 100644
--- a/en/tutorial/notebooks/locate_pixels/index.html
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diff --git a/en/tutorial/notebooks/metadata_ascii_parser/index.html b/en/tutorial/notebooks/metadata_ascii_parser/index.html
index 1d70e9176d3a5a915549a5c49006feeb964f40aa..0c46b2a1fa19bbae643b88b28f1154d3421fac43 100644
--- a/en/tutorial/notebooks/metadata_ascii_parser/index.html
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@@ -2802,5 +2802,8 @@ notebooks tutorial.
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diff --git a/en/tutorial/notebooks/metadata_overlapping_images/index.html b/en/tutorial/notebooks/metadata_overlapping_images/index.html
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--- a/en/tutorial/notebooks/metadata_overlapping_images/index.html
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@@ -2849,6 +2849,9 @@ Then define the first and last part of the string to remove
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diff --git a/en/tutorial/notebooks/normalization/index.html b/en/tutorial/notebooks/normalization/index.html
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--- a/en/tutorial/notebooks/normalization/index.html
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@@ -2831,6 +2831,9 @@ a folder name after the input data folder is created and will contain all the no
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diff --git a/en/tutorial/notebooks/normalization_batch/index.html b/en/tutorial/notebooks/normalization_batch/index.html
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@@ -2828,6 +2828,9 @@ data to normalized) while the data are normalized behind.
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diff --git a/en/tutorial/notebooks/profile/index.html b/en/tutorial/notebooks/profile/index.html
index e6e3cf8af10b610c36226e7bdbb18b1a86f1c081..ab0e31b3681444d3178a3075a5ec0f38501aaecb 100644
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@@ -2819,6 +2819,9 @@ Then the profile for each file will be saved into a comma separated table where
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diff --git a/en/tutorial/notebooks/radial_profile/index.html b/en/tutorial/notebooks/radial_profile/index.html
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@@ -2887,6 +2887,9 @@ the Export Profiles … and select where you want to creat
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diff --git a/en/tutorial/notebooks/registration/index.html b/en/tutorial/notebooks/registration/index.html
index 4cbcae9ea83b95c7f1e50a2e4a365b2066ac9209..c8424c839807db031aaca82051c6038338dfd25e 100644
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@@ -2980,6 +2980,9 @@ is displayed)
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diff --git a/en/tutorial/notebooks/rename_files/index.html b/en/tutorial/notebooks/rename_files/index.html
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@@ -2873,6 +2873,9 @@ and renamed them in the folder you selected.
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diff --git a/en/tutorial/notebooks/resonance_imaging_experiment_vs_theory/index.html b/en/tutorial/notebooks/resonance_imaging_experiment_vs_theory/index.html
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diff --git a/en/tutorial/notebooks/rotate_and_crop_images/index.html b/en/tutorial/notebooks/rotate_and_crop_images/index.html
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@@ -2736,6 +2736,9 @@
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diff --git a/en/tutorial/notebooks/select_ipts/index.html b/en/tutorial/notebooks/select_ipts/index.html
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@@ -2773,6 +2773,9 @@ A message will be displayed on the right side informing you if the file exist or
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diff --git a/en/tutorial/notebooks/topaz_config_generator/index.html b/en/tutorial/notebooks/topaz_config_generator/index.html
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@@ -2837,6 +2837,9 @@ creating the configuration file.
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diff --git a/en/tutorial/notebooks/water_intake_profile_calculator/index.html b/en/tutorial/notebooks/water_intake_profile_calculator/index.html
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@@ -2941,6 +2941,9 @@ list_of_time_stamp_user_format = o_gui.dict_data['list_time_stamp_user_format']
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- -But this happens to be a bad idea. Everyone uses Markdown because it’s pure and simple to read even non-rendered. You should avoid HTML to keep it as simple as possible.
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- jupyter notebooks used in the analysis of the data python_notebooks -
- python library used for normalization neunorm -
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-Main features
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- Buttons, Tip/Note/Info/Warning boxes, Expand -
Contribute to this documentation
- -Feel free to update this content, just click the Edit this page link displayed on top right of each page, and pullrequest it
- -Your modification will be deployed automatically when merged.
-Documentation website
- -This current documentation has been statically generated with Hugo with a simple command : hugo -t hugo-theme-learn – source code is available here at GitHub
Automatically published and hosted thanks to Netlify. Read more about Automated HUGO deployments with Netlify
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-{
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-{
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-},
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Más
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+ + + + + + + + + + + + +- + + d. Run a jupyter notebook + + + + + + +
+ + + + + + + + + + + + +- + + e. Do a CT reconstruction + + + + + + +
+ + + + + + + + + + + + +- + + f. Bragg Edge Modeling + + + + + + +
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+ + + + + + + + + + + + +- + + g. Notebooks Tutorials + + + + + + +
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- + + - Combine Folders + + + + + + + + + + + + + + + + + + + +
- + + - Combine Images + + + + + + + + + + + + + + + + + + + +
- + + - Create List of Files of Names vs Time Stamp + + + + + + + + + + + + + + + + + + + +
- + + - Cylindrical Geometry Correction + + + + + + + + + + + + + + + + + + + +
- + + - Deal Files + + + + + + + + + + + + + + + + + + + +
- + + - Display Counts of ROI vs Stack + + + + + + + + + + + + + + + + + + + +
- + + - Display File Names vs Time Stamp + + + + + + + + + + + + + + + + + + + +
- + + - Display Images and Metadata + + + + + + + + + + + + + + + + + + + +
- + + - Display Integrated Images + + + + + + + + + + + + + + + + + + + +
- + + - Display and Export Images + + + + + + + + + + + + + + + + + + + +
- + + - File Name and Metadata vs Timestamp + + + + + + + + + + + + + + + + + + + +
- + + - File Selector + + + + + + + + + + + + + + + + + + + +
- + + - Fix Images + + + + + + + + + + + + + + + + + + + +
- + + - Fix Images with Negative Pixels + + + + + + + + + + + + + + + + + + + +
- + + - Frederick IPTS + + + + + + + + + + + + + + + + + + + +
- + + - From .dsc Time Info to ASCII File vs Time + + + + + + + + + + + + + + + + + + + +
- + + - From Attenuation to Concentration + + + + + + + + + + + + + + + + + + + +
- + + - Gamma Filtering Tool + + + + + + + + + + + + + + + + + + + +
- + + - Images Metadata Matcher + + + + + + + + + + + + + + + + + + + +
- + + - Integrated ROI Counts vs File Name and Time Stamp + + + + + + + + + + + + + + + + + + + +
- + + - List TIFF Metadata + + + + + + + + + + + + + + + + + + + +
- + + - Locate Pixels + + + + + + + + + + + + + + + + + + + +
- + + - Metadata Ascii Parser + + + + + + + + + + + + + + + + + + + +
- + + - Metatadata Overlapping Images + + + + + + + + + + + + + + + + + + + +
- + + - Normalization + + + + + + + + + + + + + + + + + + + +
- + + - Normalization_batch + + + + + + + + + + + + + + + + + + + +
- + + - Profile + + + + + + + + + + + + + + + + + + + +
- + + - Radial Profile + + + + + + + + + + + + + + + + + + + +
- + + - Registration + + + + + + + + + + + + + + + + + + + +
- + + - Rename Files + + + + + + + + + + + + + + + + + + + +
- + + - Resonance Imaging Experiment vs Theory + + + + + + + + + + + + + + + + + + + +
- + + - Rotate and Crop Images + + + + + + + + + + + + + + + + + + + +
- + + - Select IPTS + + + + + + + + + + + + + + + + + + + +
- + + - TOPAZ config file generator + + + + + + + + + + + + + + + + + + + +
- + + - Template UI Builder + + + + + + + + + + + + + + + + + + + +
- + + - Water Intake Profile Calculator + + + + + + + + + + + + + +
- + + h. How to work with Amira + + + + + + +
+ + + + + + + + + + + + +- + + j. More ... + + + + + + +
+ + + + + + + + + + + + + + + + + + ++ + + + + + + +More
+-
+
+
- + Photo Gallery + + +
- + Publications + + +
- + Contacts + + +
+ + + +-+ + -- ++ + + ++ ++ + +Frequently Asked Questions
+ + + + + + + +Before Your Venue
+ +Proposal
+ + + +During your Experiment
+ + + +Data Analysis
+ + ++ + ++ + + ++ + +++ + ++ + + +Work With Us
+ + + + + + + + +-- + + -- --
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+If you need to learn how to use ImageJ, check their
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Frequently Asked Questions
- + + + + + + + + + + + + + + + + -Hugo uses Markdown for its simple content format. However, there are a lot of things that Markdown doesn’t support well. You could use pure HTML to expand possibilities.
- -But this happens to be a bad idea. Everyone uses Markdown because it’s pure and simple to read even non-rendered. You should avoid HTML to keep it as simple as possible.
- -To avoid this limitations, Hugo created shortcodes. A shortcode is a simple snippet inside a page.
- -Hugo-theme-learn provides multiple shortcodes on top of existing ones.
- + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + --
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diff --git a/fr/tags/index.html b/fr/tags/index.html
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diff --git a/fr/tutorial/how_to_access_data/index.html b/fr/tutorial/how_to_access_data/index.html
index 5f2500f1a6fd3daa525a8c133f5e3f70563624af..eef4e5271b2f211e25dfa8527d82b52420cfbb37 100644
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diff --git a/fr/tutorial/index.html b/fr/tutorial/index.html
index 07c5f8b5c4cc13057feda0e3369b7b044c5f7383..9ee04ee19f4bd16dbacabf7c40bd5326044d12b7 100644
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diff --git a/fr/vitrine/index.html b/fr/vitrine/index.html
index d11b6f75274db2477178dd41ba2eade324daf1fd..25260d45b6be153f4a6ae4c38d0322a2e843e389 100644
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diff --git a/github/index.html b/github/index.html
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- Github Repositories
- + + + + + + + + + + + + + + + + -Our gloal is to only develop open source tools. You will find here a list of the major -repositories hosting our programs
- --
-
- jupyter notebooks used in the analysis of the data python_notebooks -
- python library used for normalization neunorm -
- Imaging Resonance python library imagingReso -
- iBeatles for Bragg Edge fitting iBeatles -
- set of jupyter widgets ipywe -
- Root analysis library RootPlantProcessing -
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+ User Home Page
+ +Welcome to the ORNL Neutron Imaging Website!
+ +This site is designed to help you with the preparation of your +experiment and subsequent data processing and analysis. If you are not familiar with neutron imaging and may be +interested in collaborating with us, visit the publications page to review the science we do.
+ +For industrial applications, please contact Hassina Bilheux
+ +We recommend that you discuss your experiment with the instrument team as soon as you receive +approval of your beam time.
+Main features
+ +-
+
- Prepare your arrival: +Everything you will need to do before coming to our laboratory. +
- Capabilities: list of imaging instruments available. +
- How to: short tutorials such as how to +access your data, connect to the computers, etc. +
- Frequently Asked Questions: answers to the most frequent questions +we got from our users. +
- Links: handy links. +
We would like to thank the contribution from the research community in the implementation of this +web site, and always welcome your comments to improve it (contact +Jean Bilheux).
++ +
Web site logo: Ryzewski K., Herringer S., Bilheux H.Z., Walker L., Sheldon B., Voisin S., Bilheux J., Finocchiaro V., Neutron imaging of archaeological bronzes at the Oak Ridge National Laboratory Physics Procedia, 43, 343-351 (2013).
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- Neutron Imaging for Users Home Page
- -Introduction here (Hassina)
+ + + -We recommend that you discuss your experiment with the instrument team several weeks before your -beam time.
-Main features
+ + + + + + + + + + + --
-
- Prepare your venue -
- Automatic Search -
- Multilingual mode -
- Unlimited menu levels -
- Automatic next/prev buttons to navigate through menu entries -
- Image resizing, shadow… -
- Attachments files -
- List child pages -
- Mermaid diagram (flowchart, sequence, gantt) -
- Customizable look and feel and themes variants -
- Buttons, Tip/Note/Info/Warning boxes, Expand -
Contribute to this documentation
+ + + -Feel free to update this content, just click the Edit this page link displayed on top right of each page, and pullrequest it
+ + + + + + + + + + + -Your modification will be deployed automatically when merged.
-Documentation website
+ + + -This current documentation has been statically generated with Hugo with a simple command : hugo -t hugo-theme-learn – source code is available here at GitHub
Automatically published and hosted thanks to Netlify. Read more about Automated HUGO deployments with Netlify
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+ Access
+ + + + + +This must be completed by all participants to the experiment before the first day of experiment.
+Received training e-mail from user office (neutronusers@ornl.gov)?
+ +Completed online training if assigned? ORNL guess portal
+ +Scheduled onsite training and tour for HFIR access?
+ +Followed attached procedure to access CG-1D data?
+ +Followed attached procedure to access CG-1D analysis computer?
+ + + + + +
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+Privacy
+Accessibility
+Contact The Lab
+ORNL Home Page
+
Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
+
+
+
diff --git a/prepare_venue/access/index.xml b/prepare_venue/access/index.xml
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+Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
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+ Prepare your experiment
+ +In order to optimize your experiment time, we recommend you to go through the +check lists from this Before your Arrival menu.
+ +Feel free to print out the pdf version +and check out the items one by one.
+ +
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- Para optimizar su tiempo de experimento, le recomendamos que revise el -verifique listas de este menú Prepare Venue.
- -Siéntase libre de imprimir la pdf versión -y mira los artículos uno por uno.
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+ Proposal Confirmation
+ + + + + +To be completed by the Principal Investigator (PI) of the experiment at least 3 weeks before beam time.
+You can access your proposal using the IPTS page
+ +Confirmed samples (adding any new samples, and including composition)?
+ +Confirmed need for lab space?
+ +Confirmed experiment team that will be present at beam time (add any new members)?
+ +Confirmed experiment equipment and/or sample environment?
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+Privacy
+Accessibility
+Contact The Lab
+ORNL Home Page
+
Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
+
+
+
diff --git a/prepare_venue/proposal_confirmation/index.xml b/prepare_venue/proposal_confirmation/index.xml
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+Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
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+ Engineering & Equipment Safety
+ + + + + +To be completed by the Principal Investigator (PI) of the experiment
+Provided all safety documentation for user provided equipment immediately?
+ +Shipped/delivered all user provided equipment at least 2 +weeks prior to beam time for electrical and safety inspection?
+ +Answered all safety related questions through IPTS?
+ +Ensured that sample environment requested equipment is available +and compatible with experiment/beam line?
+ +Written a Job Hazard Analysis (JHA) for hands on work at HFIR?
+ + + + + +
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+Privacy
+Accessibility
+Contact The Lab
+ORNL Home Page
+
Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
+
+
+
diff --git a/prepare_venue/safety/index.xml b/prepare_venue/safety/index.xml
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+Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
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+ Sample Shipping
+ + + + + + + +Sample Shipping and/or Handling at HFIR
+ +Your samples must be confirmed in IPTS + before shipping.
+ +
Neutron Sciences User Sample IPTS #XXXX
+Oak Ridge National Laboratory / HFIR Site
+Bldg 7972 DP1
+Oak Ridge, TN, 37831
+USA
+
If you prefer to bring your samples, please go first to the Sample Management Desk located in the Cold Guide Hall +and work with Kristin Nevius to have all your samples labeled with an item Barcode before +proceeding to the beamline.
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+Privacy
+Accessibility
+Contact The Lab
+ORNL Home Page
+
Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
+
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+
diff --git a/prepare_venue/sample/index.xml b/prepare_venue/sample/index.xml
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+Oak Ridge National Laboratory is managed by UT-Battelle for the Department of Energy +
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