Commit 3b01b083 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

added info about relative time as metadata

parent a24a7e07
......@@ -9,15 +9,15 @@
<title>404 Page not found</title>
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......
......@@ -12,20 +12,20 @@
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......@@ -60,14 +60,14 @@
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......@@ -3772,19 +3772,19 @@
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......@@ -12,20 +12,20 @@
<title>Categories :: Documentation for Hugo Learn Theme</title>
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......@@ -60,14 +60,14 @@
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......@@ -3727,19 +3727,19 @@
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......@@ -12,20 +12,20 @@
<title>Contacts :: Documentation for Hugo Learn Theme</title>
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......@@ -60,14 +60,14 @@
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......@@ -12,20 +12,20 @@
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<link href="/css/hugo-theme.css?1634579726" rel="stylesheet">
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<script src="/js/jquery-3.3.1.min.js?1634579726"></script>
<script src="/js/jquery-3.3.1.min.js?1634581411"></script>
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......@@ -60,14 +60,14 @@
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<script type="text/javascript" src="/js/lunr.min.js?1634579726"></script>
<script type="text/javascript" src="/js/auto-complete.js?1634579726"></script>
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......@@ -4156,19 +4156,19 @@ TIFF Directory at offset 0x800008 (8388616)
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<script src="/js/perfect-scrollbar.min.js?1634579726"></script>
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<script src="/js/highlight.pack.js?1634581411"></script>
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......@@ -12,20 +12,20 @@
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......@@ -60,14 +60,14 @@
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<script type="text/javascript" src="/js/lunr.min.js?1634579726"></script>
<script type="text/javascript" src="/js/auto-complete.js?1634579726"></script>
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......@@ -3733,19 +3733,19 @@ repositories hosting our programs</p>
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<script src="/js/perfect-scrollbar.min.js?1634579726"></script>
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<script src="/js/featherlight.min.js?1634579726"></script>
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<script src="/js/featherlight.min.js?1634581411"></script>
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<script>hljs.initHighlightingOnLoad();</script>
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......
......@@ -12,20 +12,20 @@
<title>Neutron Imaging :: Documentation for Hugo Learn Theme</title>
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"title": "Metadata Overlapping Images",
"tags": [],
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"content": " Notebook name: metadata_overlapping_images.ipynb\nDescription This notebook allows you to add a dimension scale to your images. You can also add a given metadata value for each of the images, or a graph showing the entire metadata plot and the current image metadata position on this graph.\n Scale added on top of image Metadata of current image Graph of all metadata and current metadata value Start the notebook If you need help accessing this notebook, check the How To \u0026gt; Start the python notebooks tutorial.\nHow to Use It? Select your IPTS Check the full tutorial here\nloading the Images Select the images you want to process using the File Selector. Once you click the Select button, the time stamp and the images will be automatically loaded. Wait for the progress bar to be done.\nNeed help using the File Selector?\n A progress bar will show you the loading progress. Make sure you wait for the busy signal to goes away before moving on to the next cell. Profile UI Presentation How Does it Work ? Scale Select the scale option to add a dimension marker on top of the images. You can define:\n orientation of the scale size and label color thickness of the line position of the scale/label in the image Metadata When using metadata, two features are offered: * you can display and personalize 1 or 2 metadata values on top of the plot * you can also plot a metadata versus file index, or versus another metadata\nWe are going to review each of those features one by one as they each come up with many settings to you define.\nDisplaying metadata in image If you want to display on each image 1 or 2 metadata values, use this feature. RIGHT CLICK inside the table and click Select Metadata \u0026hellip;.\nThis will bring the Select Metadata Toolbox.\nSelect first the metadata you want to use. Some of the metadata only have a value, others have a string attached to the value. You can either use the metadata as it is, or if you want to remove part of the string, use the String cleaning widgets to remove some text.\nIf the metadata, before or after cleaning, can be converted to a float, you have access to widgets that allow you to perform up to 2 linear operations on it. If any equation has been defined, this equation will be applied to this metadata for every single file selected and will be displayed in the final table once you click SELECT.\nSettings In order to customize the text, you can: * move it inside the image * change the size of the font * add a string BEFORE (prefix) and/or AFTER (suffix)\nPlot metadata in image This plot is used to see the value of the current file metadata over the entire stack of images selected. For example, in the case of a sample where the Temperature changes over time, this plot will show the current temperature of the image as well as the temperature of all the images.\nIt\u0026rsquo;s possible to change the default x-axis (file index) to any of the 2 metadata. RIGHT CLICK and click X-AXIS or Y-AXIS.\nYou can define the legend of each axis using the settings widgets.\nExport Table You can export the table into an ascii file. Click Export Table \u0026hellip; and select the output folder.\nExport You can now export all your images. The PNG files created will be a copy of the current UI image preview. Click Export Images \u0026hellip; at the bottom right and select the location where you want to create the images.\n"
"content": " Notebook name: metadata_overlapping_images.ipynb\nDescription This notebook allows you to add a dimension scale to your images. You can also add a given metadata value for each of the images, or a graph showing the entire metadata plot and the current image metadata position on this graph.\n Scale added on top of image Metadata of current image Graph of all metadata and current metadata value Start the notebook If you need help accessing this notebook, check the How To \u0026gt; Start the python notebooks tutorial.\nHow to Use It? Select your IPTS Check the full tutorial here\nloading the Images Select the images you want to process using the File Selector. Once you click the Select button, the time stamp and the images will be automatically loaded. Wait for the progress bar to be done.\nNeed help using the File Selector?\n A progress bar will show you the loading progress. Make sure you wait for the busy signal to goes away before moving on to the next cell. Profile UI Presentation How Does it Work ? Scale Select the scale option to add a dimension marker on top of the images. You can define:\n orientation of the scale size and label color thickness of the line position of the scale/label in the image Metadata When using metadata, two features are offered: * you can display and personalize 1 or 2 metadata values on top of the plot * you can also plot a metadata versus file index, or versus another metadata\nWe are going to review each of those features one by one as they each come up with many settings to you define.\nDisplaying metadata in image If you want to display on each image 1 or 2 metadata values, use this feature. RIGHT CLICK inside the table and click Select Metadata \u0026hellip;.\nThis will bring the Select Metadata Toolbox.\nSelect first the metadata you want to use. Some of the metadata only have a value, others have a string attached to the value. You can either use the metadata as it is, or if you want to remove part of the string, use the String cleaning widgets to remove some text.\nIf the metadata, before or after cleaning, can be converted to a float, you have access to widgets that allow you to perform up to 2 linear operations on it. If any equation has been defined, this equation will be applied to this metadata for every single file selected and will be displayed in the final table once you click SELECT.\nSettings In order to customize the text, you can: * move it inside the image * change the size of the font * add a string BEFORE (prefix) and/or AFTER (suffix)\nPlot metadata in image This plot is used to see the value of the current file metadata over the entire stack of images selected. For example, in the case of a sample where the Temperature changes over time, this plot will show the current temperature of the image as well as the temperature of all the images.\nIt\u0026rsquo;s possible to change the default x-axis (file index) to any of the 2 metadata. RIGHT CLICK and click X-AXIS or Y-AXIS.\nYou can define the legend of each axis using the settings widgets.\nExport Table You can export the table into an ascii file. Click Export Table \u0026hellip; and select the output folder.\nExport You can now export all your images. The PNG files created will be a copy of the current UI image preview. Click Export Images \u0026hellip; at the bottom right and select the location where you want to create the images.\nUse relative time as metadata. Some of the metadata do not have a meaningful name. For example the acquisition time is recorded in linux format and can be found here (see screenshot). To get the relative time of each image, remove the acquisition time of the first image via the linear equation. "
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