Commit 27fc0c64 authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

updated combine n by n files doc.

parent 9a2e3ad6
......@@ -9,15 +9,15 @@
<title>404 Page not found</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
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<style>
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......
......@@ -12,20 +12,20 @@
<title>Capabilities :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
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<link href="/css/hybrid.css?1633624092" rel="stylesheet">
<link href="/css/featherlight.min.css?1633624092" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1633624092" rel="stylesheet">
<link href="/css/auto-complete.css?1633624092" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1633624092" rel="stylesheet">
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<script src="/js/jquery-3.3.1.min.js?1631722620"></script>
<script src="/js/jquery-3.3.1.min.js?1633624092"></script>
<style>
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......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span>
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<script type="text/javascript" src="/js/auto-complete.js?1631722620"></script>
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......@@ -3772,19 +3772,19 @@
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<script src="/js/clipboard.min.js?1631722620"></script>
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<script src="/js/jquery.sticky.js?1631722620"></script>
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<script src="/js/highlight.pack.js?1631722620"></script>
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<script src="/js/featherlight.min.js?1633624092"></script>
<script src="/js/highlight.pack.js?1633624092"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1631722620"></script>
<script src="/js/learn.js?1631722620"></script>
<script src="/js/hugo-learn.js?1631722620"></script>
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<script>
mermaid.initialize({ startOnLoad: true });
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......
......@@ -12,20 +12,20 @@
<title>Categories :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
<link href="/css/featherlight.min.css?1631722620" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1631722620" rel="stylesheet">
<link href="/css/auto-complete.css?1631722620" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1631722620" rel="stylesheet">
<link href="/css/theme.css?1631722620" rel="stylesheet">
<link href="/css/hugo-theme.css?1631722620" rel="stylesheet">
<link href="/css/nucleus.css?1633624092" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1633624092" rel="stylesheet">
<link href="/css/hybrid.css?1633624092" rel="stylesheet">
<link href="/css/featherlight.min.css?1633624092" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1633624092" rel="stylesheet">
<link href="/css/auto-complete.css?1633624092" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1633624092" rel="stylesheet">
<link href="/css/theme.css?1633624092" rel="stylesheet">
<link href="/css/hugo-theme.css?1633624092" rel="stylesheet">
<link href="/css/theme-blue.css?1631722620" rel="stylesheet">
<link href="/css/theme-blue.css?1633624092" rel="stylesheet">
<script src="/js/jquery-3.3.1.min.js?1631722620"></script>
<script src="/js/jquery-3.3.1.min.js?1633624092"></script>
<style>
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1631722620"></script>
<script type="text/javascript" src="/js/auto-complete.js?1631722620"></script>
<script type="text/javascript" src="/js/lunr.min.js?1633624092"></script>
<script type="text/javascript" src="/js/auto-complete.js?1633624092"></script>
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......@@ -3727,19 +3727,19 @@
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<script src="/js/clipboard.min.js?1631722620"></script>
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<script src="/js/jquery.sticky.js?1631722620"></script>
<script src="/js/featherlight.min.js?1631722620"></script>
<script src="/js/highlight.pack.js?1631722620"></script>
<script src="/js/clipboard.min.js?1633624092"></script>
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<script src="/js/featherlight.min.js?1633624092"></script>
<script src="/js/highlight.pack.js?1633624092"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1631722620"></script>
<script src="/js/learn.js?1631722620"></script>
<script src="/js/hugo-learn.js?1631722620"></script>
<script src="/js/modernizr.custom-3.6.0.js?1633624092"></script>
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<script src="/js/hugo-learn.js?1633624092"></script>
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<link href="/mermaid/mermaid.css?1633624092" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1633624092"></script>
<script>
mermaid.initialize({ startOnLoad: true });
</script>
......
......@@ -12,20 +12,20 @@
<title>Contacts :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
<link href="/css/featherlight.min.css?1631722620" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1631722620" rel="stylesheet">
<link href="/css/auto-complete.css?1631722620" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1631722620" rel="stylesheet">
<link href="/css/theme.css?1631722620" rel="stylesheet">
<link href="/css/hugo-theme.css?1631722620" rel="stylesheet">
<link href="/css/nucleus.css?1633624092" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1633624092" rel="stylesheet">
<link href="/css/hybrid.css?1633624092" rel="stylesheet">
<link href="/css/featherlight.min.css?1633624092" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1633624092" rel="stylesheet">
<link href="/css/auto-complete.css?1633624092" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1633624092" rel="stylesheet">
<link href="/css/theme.css?1633624092" rel="stylesheet">
<link href="/css/hugo-theme.css?1633624092" rel="stylesheet">
<link href="/css/theme-blue.css?1631722620" rel="stylesheet">
<link href="/css/theme-blue.css?1633624092" rel="stylesheet">
<script src="/js/jquery-3.3.1.min.js?1631722620"></script>
<script src="/js/jquery-3.3.1.min.js?1633624092"></script>
<style>
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1631722620"></script>
<script type="text/javascript" src="/js/auto-complete.js?1631722620"></script>
<script type="text/javascript" src="/js/lunr.min.js?1633624092"></script>
<script type="text/javascript" src="/js/auto-complete.js?1633624092"></script>
<script type="text/javascript">
var baseurl = "";
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......@@ -3805,19 +3805,19 @@
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<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1631722620"></script>
<script src="/js/jquery.sticky.js?1631722620"></script>
<script src="/js/featherlight.min.js?1631722620"></script>
<script src="/js/highlight.pack.js?1631722620"></script>
<script src="/js/clipboard.min.js?1633624092"></script>
<script src="/js/perfect-scrollbar.min.js?1633624092"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1633624092"></script>
<script src="/js/jquery.sticky.js?1633624092"></script>
<script src="/js/featherlight.min.js?1633624092"></script>
<script src="/js/highlight.pack.js?1633624092"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1631722620"></script>
<script src="/js/learn.js?1631722620"></script>
<script src="/js/hugo-learn.js?1631722620"></script>
<script src="/js/modernizr.custom-3.6.0.js?1633624092"></script>
<script src="/js/learn.js?1633624092"></script>
<script src="/js/hugo-learn.js?1633624092"></script>
<link href="/mermaid/mermaid.css?1631722620" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1631722620"></script>
<link href="/mermaid/mermaid.css?1633624092" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1633624092"></script>
<script>
mermaid.initialize({ startOnLoad: true });
</script>
......
......@@ -12,20 +12,20 @@
<title>Frequently Asked Questions :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
<link href="/css/featherlight.min.css?1631722620" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1631722620" rel="stylesheet">
<link href="/css/auto-complete.css?1631722620" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1631722620" rel="stylesheet">
<link href="/css/theme.css?1631722620" rel="stylesheet">
<link href="/css/hugo-theme.css?1631722620" rel="stylesheet">
<link href="/css/nucleus.css?1633624092" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1633624092" rel="stylesheet">
<link href="/css/hybrid.css?1633624092" rel="stylesheet">
<link href="/css/featherlight.min.css?1633624092" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1633624092" rel="stylesheet">
<link href="/css/auto-complete.css?1633624092" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1633624092" rel="stylesheet">
<link href="/css/theme.css?1633624092" rel="stylesheet">
<link href="/css/hugo-theme.css?1633624092" rel="stylesheet">
<link href="/css/theme-blue.css?1631722620" rel="stylesheet">
<link href="/css/theme-blue.css?1633624092" rel="stylesheet">
<script src="/js/jquery-3.3.1.min.js?1631722620"></script>
<script src="/js/jquery-3.3.1.min.js?1633624092"></script>
<style>
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1631722620"></script>
<script type="text/javascript" src="/js/auto-complete.js?1631722620"></script>
<script type="text/javascript" src="/js/lunr.min.js?1633624092"></script>
<script type="text/javascript" src="/js/auto-complete.js?1633624092"></script>
<script type="text/javascript">
var baseurl = "";
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<script type="text/javascript" src="/js/search.js?1631722620"></script>
<script type="text/javascript" src="/js/search.js?1633624092"></script>
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......@@ -4156,19 +4156,19 @@ TIFF Directory at offset 0x800008 (8388616)
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1631722620"></script>
<script src="/js/jquery.sticky.js?1631722620"></script>
<script src="/js/featherlight.min.js?1631722620"></script>
<script src="/js/highlight.pack.js?1631722620"></script>
<script src="/js/clipboard.min.js?1633624092"></script>
<script src="/js/perfect-scrollbar.min.js?1633624092"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1633624092"></script>
<script src="/js/jquery.sticky.js?1633624092"></script>
<script src="/js/featherlight.min.js?1633624092"></script>
<script src="/js/highlight.pack.js?1633624092"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1631722620"></script>
<script src="/js/learn.js?1631722620"></script>
<script src="/js/hugo-learn.js?1631722620"></script>
<script src="/js/modernizr.custom-3.6.0.js?1633624092"></script>
<script src="/js/learn.js?1633624092"></script>
<script src="/js/hugo-learn.js?1633624092"></script>
<link href="/mermaid/mermaid.css?1631722620" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1631722620"></script>
<link href="/mermaid/mermaid.css?1633624092" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1633624092"></script>
<script>
mermaid.initialize({ startOnLoad: true });
</script>
......
......@@ -12,20 +12,20 @@
<title>Github Repositories :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
<link href="/css/featherlight.min.css?1631722620" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1631722620" rel="stylesheet">
<link href="/css/auto-complete.css?1631722620" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1631722620" rel="stylesheet">
<link href="/css/theme.css?1631722620" rel="stylesheet">
<link href="/css/hugo-theme.css?1631722620" rel="stylesheet">
<link href="/css/nucleus.css?1633624092" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1633624092" rel="stylesheet">
<link href="/css/hybrid.css?1633624092" rel="stylesheet">
<link href="/css/featherlight.min.css?1633624092" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1633624092" rel="stylesheet">
<link href="/css/auto-complete.css?1633624092" rel="stylesheet">
<link href="/css/atom-one-dark-reasonable.css?1633624092" rel="stylesheet">
<link href="/css/theme.css?1633624092" rel="stylesheet">
<link href="/css/hugo-theme.css?1633624092" rel="stylesheet">
<link href="/css/theme-blue.css?1631722620" rel="stylesheet">
<link href="/css/theme-blue.css?1633624092" rel="stylesheet">
<script src="/js/jquery-3.3.1.min.js?1631722620"></script>
<script src="/js/jquery-3.3.1.min.js?1633624092"></script>
<style>
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fas fa-times"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1631722620"></script>
<script type="text/javascript" src="/js/auto-complete.js?1631722620"></script>
<script type="text/javascript" src="/js/lunr.min.js?1633624092"></script>
<script type="text/javascript" src="/js/auto-complete.js?1633624092"></script>
<script type="text/javascript">
var baseurl = "";
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......@@ -3733,19 +3733,19 @@ repositories hosting our programs</p>
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.min.js?1631722620"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1631722620"></script>
<script src="/js/jquery.sticky.js?1631722620"></script>
<script src="/js/featherlight.min.js?1631722620"></script>
<script src="/js/highlight.pack.js?1631722620"></script>
<script src="/js/clipboard.min.js?1633624092"></script>
<script src="/js/perfect-scrollbar.min.js?1633624092"></script>
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<script src="/js/jquery.sticky.js?1633624092"></script>
<script src="/js/featherlight.min.js?1633624092"></script>
<script src="/js/highlight.pack.js?1633624092"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom-3.6.0.js?1631722620"></script>
<script src="/js/learn.js?1631722620"></script>
<script src="/js/hugo-learn.js?1631722620"></script>
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<link href="/mermaid/mermaid.css?1633624092" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1633624092"></script>
<script>
mermaid.initialize({ startOnLoad: true });
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......
......@@ -12,20 +12,20 @@
<title>Neutron Imaging :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1631722620" rel="stylesheet">
<link href="/css/fontawesome-all.min.css?1631722620" rel="stylesheet">
<link href="/css/hybrid.css?1631722620" rel="stylesheet">
<link href="/css/featherlight.min.css?1631722620" rel="stylesheet">
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"title": "Combine Images n by n",
"tags": [],
"description": "",
"content": " Notebook name: combine_images_n_by_n.ipynb\nDescription This notebook allows you to combine the images contain in the folder you selected by group of n by n using 3 different algorithms.\n Arithmetic Mean Geometric Mean Add Not seeing the algorithm you want to use? Please let me know and I will add it (Jean Bilheux)\n Example:\nlet\u0026rsquo;s pretend you selected a folder containing the following 21 images\nInput\n image001.fits\n image002.fits image003.fits image004.fits image005.fits image006.fits image007.fits image008.fits image009.fits image010.fits\n image011.fits image012.fits image013.fits image014.fits image015.fits image016.fits image017.fits image018.fits image019.fits image020.fits image021.fits and you decided to combine the first 4 images, then the following 4, and so on\nThis will produce 5 files\n 4_files_combined_0001.tif 4_files_combined_0002.tif 4_files_combined_0003.tif 4_files_combined_0004.tif 4_files_combined_0005.tif where the first one will be the combination of image001.fits, image002.fits, image003.fits and image004.fits\nNB: Because there were 21 images to start with, the last image was dropped (image021.fits) as 21 can not be evenly divided by 4!\nHow does the notebook work? Select your IPTS Need help using the IPTS selector?\n Select the folder containing the images to merge/combine Using the file selection tool, select the folder\nMerging method It\u0026rsquo;s time to select your merging algorithm (check the description at the top of this web page for the explanation of the algorithms).\nHow do you want to combine those images This is where you specify how you want to combine them. If you select 2, the first 2 images will be combined, then the next 2, and so on. If the number of images can not be evenly divided by this coefficient, then the last images won\u0026rsquo;t be used.\nSelect output location Using the folder selection tool, select the location where you want to create the combine images.\nMerging Once you have entered the output folder, the images will be automatically merged and a progress bar will let you know of the progress of the operation. Then finally, the notebook will let you know when it\u0026rsquo;s done and show you where those files have been created.\nWorking with TOF data If you are working with TOF data set, where a _Spectra.txt file is present, the notebook will automatically create a new _Spectra.txt file according to the merging parameters you selected.\n The first column of the file, time, will be the average of the corresponding row/files combined The second column, total counts will use the same algorithm than the one you selected in the notebook. If a Spectra file has been located and a new one created, the full file path of that file will be displayed in the notebook\n"
"content": " Notebook name: combine_images_n_by_n.ipynb\nDescription This notebook allows you to combine the images contain in the folder you selected by group of n by n using 3 different algorithms.\n Arithmetic Mean Geometric Mean Add\n Median\n Not seeing the algorithm you want to use? Please let me know and I will add it (Jean Bilheux)\n Example:\nlet\u0026rsquo;s pretend you selected a folder containing the following 21 images\nInput\n data_000_010_000.fits\n data_000_010_001.fits data_000_010_002.fits data_000_010_003.fits data_000_020_004.fits data_000_020_005.fits data_000_020_006.fits data_000_020_007.fits data_000_030_008.fits data_000_030_009.fits\n data_000_030_010.fits data_000_030_011.fits data_000_040_012.fits data_000_040_013.fits data_000_040_014.fits data_000_040_015.fits data_000_050_016.fits data_000_050_017.fits data_000_050_018.fits data_000_050_019.fits data_000_060_020.fits and you decided to combine the first 4 images, then the following 4, and so on\nThis will produce 5 files, for which you will have the option to named based on their initial file name, or not.\nOption 1 using their base name\n data_000_010_000.tif data_000_020_001.tif data_000_030_002.tif data_000_040_003.tif data_000_050_004.tif or Option 2, using new names\n image_000.tif image_001.tif image_002.tif image_003.tif image_004.tif where the first one will be the combination of data_000_010_000.fits, data_000_010_001.fits, data_000_010_002.fits and data_000_010_003.fits\nNB: Because there were 21 images to start with, the last image was dropped (data_000_060_020.fits) as 21 can not be evenly divided by 4!\nHow does the notebook work? Select your IPTS Need help using the IPTS selector?\n Select the folder containing the images to merge/combine Using the file selection tool, select the folder\nMerging method It\u0026rsquo;s time to select your merging algorithm (check the description at the top of this web page for the explanation of the algorithms).\nHow do you want to combine those images This is where you specify how you want to combine them. If you select 2, the first 2 images will be combined, then the next 2, and so on. If the number of images can not be evenly divided by this coefficient, then the last images won\u0026rsquo;t be used.\nPreview of how the files will be combined and renamed This is where you can check that the files are correctly grouped. You can also choose to rename the new files or use the base file name of the input data sets. In this case the program will conserve the common string of the file name up to the previous \u0026ldquo;_\u0026rdquo; (underscore) file separator.\n For example if the two following files are combined\n /Volumes/G-DRIVE/IPTS/IPTS-12345/CT/20210505_1C30_150_tomo_0010_002_000_015.tif /Volumes/G-DRIVE/IPTS/IPTS-12345/CT/20210505_1C30_150_tomo_0010_002_000_016.tif the resulting base name of the output file will look like\n 20210505_1C30_150_tomo_0010_002_000.001.tif Select output location Using the folder selection tool, select the location where you want to create the combine images.\nMerging Once you have entered the output folder, the images will be automatically merged and a progress bar will let you know of the progress of the operation. Then finally, the notebook will let you know when it\u0026rsquo;s done and show you where those files have been created.\nWorking with TOF data If you are working with TOF data set, where a _Spectra.txt file is present, the notebook will automatically create a new _Spectra.txt file according to the merging parameters you selected.\n The first column of the file, time, will be the average of the corresponding row/files combined The second column, total counts will use the same algorithm than the one you selected in the notebook. If a Spectra file has been located and a new one created, the full file path of that file will be displayed in the notebook\n"
},
{
"uri": "/tutorial/notebooks/sequential_combine_images_using_metadata/",
......
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