Commit 229de7de authored by Bilheux, Jean-Christophe's avatar Bilheux, Jean-Christophe
Browse files

Added deal_images notebook tutorial

parent 29b8cf70
......@@ -13,19 +13,19 @@
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......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">
- Deal Images <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -2791,20 +2791,20 @@ repositories hosting our programs</p>
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......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">
- Deal Images <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -2785,20 +2785,20 @@ web site, and always <strong>welcome your comments</strong> to improve it (conta
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
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......
......@@ -116,7 +116,7 @@
"title": "Notebooks Tutorials",
"tags": [],
"description": "",
"content": " bin_images bragg_edge_signal_vs_powder_peaks calculate_water_intake_profile calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_files display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images fix_images_with_negative_pixels frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata locate_pixels metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
"content": " bin_images bragg_edge_signal_vs_powder_peaks calculate_water_intake_profile calibrated_transmission combine_folders combine_images create_list_of_file_name_vs_time_stamp cylindrical_geometry_correction deal_images display_and_export_images_with_metadata_profile display_and_export_images_with_timestamp display_counts_of_region_vs_stack display_file_names_vs_time_stamp display_integrated_stack_of_images file_name_and_metadata_vs_time_stamp fix_images fix_images_with_negative_pixels frederick_ipts from_attenuation_to_concentration from_dsc_time_info_to_ascii_file_vs_time ipts_18813 gamma_filtering_tool images_metadata_matcher IN PROGRESS integrated_roi_counts_vs_file_name_and_time_stamp list_tiff_metadata locate_pixels metadata_ascii_parser metadata_overlapping_images normalization normalization_batch profile radial_profile registration rename_files resonance_imaging_experiment_vs_theory rotate_and_crop_images template_ui topaz_config_generator water_intake_profile_calculator \nTools File Selector Select IPTS \n Recently updated\n"
},
{
"uri": "/tutorial/how_to_start_amira/",
......@@ -210,11 +210,11 @@
"content": " Notebook name: cylindrical_geometry_correction.ipynb\nDescription Start the notebook If you need help accessing this notebook, check the How To \u0026gt; Start the python notebooks tutorial.\nHow to Use It? Select your IPTS Check the full tutorial here\nloading the Images You need to provide the list of samples, OB and DF (if needed). To do so, just SHIFT + ENTER the following cell to display a selection tool wizard.\nThe dialogbox will start listing the files from the IPTS folder you selected in the first cell. Feel free to navigate to find your data set.\n"
},
{
"uri": "/tutorial/notebooks/deal_files/",
"title": "Deal Files",
"uri": "/tutorial/notebooks/deal_images/",
"title": "Deal Images",
"tags": [],
"description": "",
"content": "Notebook name: deal_files.ipynb\n"
"content": " Notebook name: deal_images.ipynb\nDescription There will be cases where a folder contains several different experiment, or set up, or measure. You will need to sort those images into their own folder. Hopefully this notebook can save you a ton of time by doing it automatically. The algorithm to \u0026lsquo;group\u0026rsquo; the images is based on the name of those files.\nThe following picture illustrates the principle of the deal\nThis program assumes that the file names follow this schema\ntext\u0026lt;image_ref\u0026gt;_\u0026lt;image_index\u0026gt;.\u0026lt;ext\u0026gt; If it does not, run the notebook rename_files.ipynb.\n Select your IPTS Need help using the IPTS selector?\n Select the Input Folder Using the folder selection tool, select the folder that contains the images you need to separate.\nSelect the Output Folder Using the folder selection tool, select the folder that will contain the folders of all the deal images.\n"
},
{
"uri": "/tutorial/notebooks/display_counts_of_region_vs_stack/",
......
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......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">
- Deal Images <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -3040,20 +3040,20 @@
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......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">
- Deal Images <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -2802,20 +2802,20 @@
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<link href="/css/hybrid.css?1550605047" rel="stylesheet">
<link href="/css/featherlight.min.css?1550605047" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1550605047" rel="stylesheet">
<link href="/css/auto-complete.css?1550605047" rel="stylesheet">
<link href="/css/theme.css?1550605047" rel="stylesheet">
<link href="/css/hugo-theme.css?1550605047" rel="stylesheet">
<link href="/css/nucleus.css?1550866358" rel="stylesheet">
<link href="/css/font-awesome.min.css?1550866358" rel="stylesheet">
<link href="/css/hybrid.css?1550866358" rel="stylesheet">
<link href="/css/featherlight.min.css?1550866358" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1550866358" rel="stylesheet">
<link href="/css/auto-complete.css?1550866358" rel="stylesheet">
<link href="/css/theme.css?1550866358" rel="stylesheet">
<link href="/css/hugo-theme.css?1550866358" rel="stylesheet">
<link href="/css/theme-blue.css?1550605047" rel="stylesheet">
<link href="/css/theme-blue.css?1550866358" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1550605047"></script>
<script src="/js/jquery-2.x.min.js?1550866358"></script>
<style type="text/css">
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1550605047"></script>
<script type="text/javascript" src="/js/auto-complete.js?1550605047"></script>
<script type="text/javascript" src="/js/lunr.min.js?1550866358"></script>
<script type="text/javascript" src="/js/auto-complete.js?1550866358"></script>
<script type="text/javascript">
var baseurl = "";
</script>
<script type="text/javascript" src="/js/search.js?1550605047"></script>
<script type="text/javascript" src="/js/search.js?1550866358"></script>
</div>
......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">
- Deal Images <i class='fa fa-battery-full'></i>
<i class="fa fa-check read-icon"></i>
......@@ -2792,20 +2792,20 @@ and check out the items one by one.</p>
<div style="left: -1000px; overflow: scroll; position: absolute; top: -1000px; border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;">
<div style="border: none; box-sizing: content-box; height: 200px; margin: 0px; padding: 0px; width: 200px;"></div>
</div>
<script src="/js/clipboard.min.js?1550605047"></script>
<script src="/js/perfect-scrollbar.min.js?1550605047"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1550605047"></script>
<script src="/js/jquery.sticky.js?1550605047"></script>
<script src="/js/featherlight.min.js?1550605047"></script>
<script src="/js/html5shiv-printshiv.min.js?1550605047"></script>
<script src="/js/highlight.pack.js?1550605047"></script>
<script src="/js/clipboard.min.js?1550866358"></script>
<script src="/js/perfect-scrollbar.min.js?1550866358"></script>
<script src="/js/perfect-scrollbar.jquery.min.js?1550866358"></script>
<script src="/js/jquery.sticky.js?1550866358"></script>
<script src="/js/featherlight.min.js?1550866358"></script>
<script src="/js/html5shiv-printshiv.min.js?1550866358"></script>
<script src="/js/highlight.pack.js?1550866358"></script>
<script>hljs.initHighlightingOnLoad();</script>
<script src="/js/modernizr.custom.71422.js?1550605047"></script>
<script src="/js/learn.js?1550605047"></script>
<script src="/js/hugo-learn.js?1550605047"></script>
<script src="/js/modernizr.custom.71422.js?1550866358"></script>
<script src="/js/learn.js?1550866358"></script>
<script src="/js/hugo-learn.js?1550866358"></script>
<link href="/mermaid/mermaid.css?1550605047" type="text/css" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1550605047"></script>
<link href="/mermaid/mermaid.css?1550866358" type="text/css" rel="stylesheet" />
<script src="/mermaid/mermaid.js?1550866358"></script>
<script>
mermaid.initialize({ startOnLoad: true });
</script>
......
This diff is collapsed.
......@@ -13,19 +13,19 @@
<title>Sample Shipping :: Documentation for Hugo Learn Theme</title>
<link href="/css/nucleus.css?1550605047" rel="stylesheet">
<link href="/css/font-awesome.min.css?1550605047" rel="stylesheet">
<link href="/css/hybrid.css?1550605047" rel="stylesheet">
<link href="/css/featherlight.min.css?1550605047" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1550605047" rel="stylesheet">
<link href="/css/auto-complete.css?1550605047" rel="stylesheet">
<link href="/css/theme.css?1550605047" rel="stylesheet">
<link href="/css/hugo-theme.css?1550605047" rel="stylesheet">
<link href="/css/nucleus.css?1550866358" rel="stylesheet">
<link href="/css/font-awesome.min.css?1550866358" rel="stylesheet">
<link href="/css/hybrid.css?1550866358" rel="stylesheet">
<link href="/css/featherlight.min.css?1550866358" rel="stylesheet">
<link href="/css/perfect-scrollbar.min.css?1550866358" rel="stylesheet">
<link href="/css/auto-complete.css?1550866358" rel="stylesheet">
<link href="/css/theme.css?1550866358" rel="stylesheet">
<link href="/css/hugo-theme.css?1550866358" rel="stylesheet">
<link href="/css/theme-blue.css?1550605047" rel="stylesheet">
<link href="/css/theme-blue.css?1550866358" rel="stylesheet">
<script src="/js/jquery-2.x.min.js?1550605047"></script>
<script src="/js/jquery-2.x.min.js?1550866358"></script>
<style type="text/css">
:root #header + #content > #left > #rlblock_left{
......@@ -60,14 +60,14 @@
<span data-search-clear=""><i class="fa fa-close"></i></span>
</div>
<script type="text/javascript" src="/js/lunr.min.js?1550605047"></script>
<script type="text/javascript" src="/js/auto-complete.js?1550605047"></script>
<script type="text/javascript" src="/js/lunr.min.js?1550866358"></script>
<script type="text/javascript" src="/js/auto-complete.js?1550866358"></script>
<script type="text/javascript">
var baseurl = "";
</script>
<script type="text/javascript" src="/js/search.js?1550605047"></script>
<script type="text/javascript" src="/js/search.js?1550866358"></script>
</div>
......@@ -769,13 +769,13 @@
<li data-nav-id="/tutorial/notebooks/deal_files/" title="Deal Files" class="dd-item
<li data-nav-id="/tutorial/notebooks/deal_images/" title="Deal Images" class="dd-item
">
<a href="/tutorial/notebooks/deal_files/">
- Deal Files <i class='fa fa-battery-empty'></i>
<a href="/tutorial/notebooks/deal_images/">