First attempt at adding test for harness. (7090c3ea) · Commits · Hamilton, Steven P. / ProfugusMC

Profugus/CPU_1node/Inputs

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		../Source/Inputs
		No newline at end of file

Profugus/CPU_1node/Scripts/check_profugus.sh

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		#!/bin/bash -l

		echo "Starting $0 in `pwd`..."

		REFVAL=1
		OUTFNAME=stdout.txt
		nsuccess=`grep -c "Total execution time" $OUTFNAME`

		if [ $nsuccess -eq ${REFVAL} ]
		then
		echo "PASSED"
		exit 0
		else
		echo "FAILED"
		exit 1
		fi

Profugus/CPU_1node/Scripts/lsf.template.x

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		#! /bin/bash -l
		#BSUB -q __batchqueue__
		#BSUB -J __jobname__
		#BSUB -o __resultsdir__/__jobname__.o%J
		#BSUB -e __resultsdir__/__jobname__.e%J
		#BSUB -n __total_processes__
		#BSUB -W __walltime__
		#BSUB -P CSC244

		#-----------------------------------------------------
		# Set up the environment for use of the harness. -
		# -
		#-----------------------------------------------------
		source __rgtenvironmentalfile__
		module load __nccstestharnessmodule__
		module load gcc
		module load spectrum_mpi
		module list

		#-----------------------------------------------------
		# Define some variables. -
		# -
		#-----------------------------------------------------
		EXECUTABLE="__pathtoexecutable__"
		STARTINGDIRECTORY="__startingdirectory__"
		WORKDIR="__workdir__"
		RESULTSDIR="__resultsdir__"
		UNIQUE_ID_STRING="__unique_id_string__"
		INPUTDIR=${STARTINGDIRECTORY}/../Inputs

		#-----------------------------------------------------
		# Ensure that we are in the correct starting -
		# directory. -
		# -
		#-----------------------------------------------------
		cd $STARTINGDIRECTORY

		#-----------------------------------------------------
		# Make the working scratch space directory. -
		# -
		#-----------------------------------------------------
		if [ ! -e $WORKDIR ]
		then
		mkdir -p $WORKDIR
		fi

		#-----------------------------------------------------
		# Make the results directory. -
		# -
		#-----------------------------------------------------
		if [ ! -e $RESULTSDIR ]
		then
		mkdir -p $RESULTSDIR
		fi

		#-----------------------------------------------------
		# Change directory to the working directory. -
		# -
		#-----------------------------------------------------
		cd $WORKDIR

		echo "Changed to working directory"
		pwd
		ls -l


		#-----------------------------------------------------
		# Link input files into current directory
		# -
		#-----------------------------------------------------
		echo "Contents of input directory:"
		ls -l ${INPUTDIR}

		ln -s ${INPUTDIR}/c5g7_3d_cpu_1node.xml .
		ln -s ${INPUTDIR}/c5g7_252g.xml .

		#-----------------------------------------------------
		# Run the executable. -
		# -
		#-----------------------------------------------------
		log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode start

		mpirun --oversubscribe -np 20 packages/MC/xmc -i c5g7_3d_cpu_1node.xml

		log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode final

		sleep 30
		#-----------------------------------------------------
		# Enusre that we return to the starting directory. -
		# -
		#-----------------------------------------------------
		cd $STARTINGDIRECTORY

		#-----------------------------------------------------
		# Copy the results back to the $RESULTSDIR -
		# -
		#-----------------------------------------------------
		cp -rf $WORKDIR/* $RESULTSDIR && rm -rf $WORKDIR

		#-----------------------------------------------------
		# Move the batch file name to $RESULTSDIR -
		# -
		#-----------------------------------------------------
		mv __batchfilename__ $RESULTSDIR

		#-----------------------------------------------------
		# Check the final results. -
		# -
		#-----------------------------------------------------
		check_executable_driver.py -p $RESULTSDIR -i $UNIQUE_ID_STRING

		#-----------------------------------------------------
		# The script now determines if we are to resubmit -
		# itself. -
		# -
		#-----------------------------------------------------
		case __resubmitme__ in
		0)
		test_harness_driver.py -r;;

		1)
		echo "No resubmit";;
		esac

Profugus/CPU_1node/Scripts/pbs.template.x

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Original line number	Diff line number	Diff line
		#! /bin/bash -l

		#PBS -e __resultsdir__
		#PBS -o __resultsdir__
		#PBS -N __jobname__
		#PBS -l walltime=__walltime__
		#PBS -l nodes=__nodes__
		#PBS -q __batchqueue__
		#PBS -A __pbsaccountid__

		#-----------------------------------------------------
		# Set up the environment for use of the harness. -
		# -
		#-----------------------------------------------------
		source __rgtenvironmentalfile__
		module load __nccstestharnessmodule__

		#-----------------------------------------------------
		# Define some variables. -
		# -
		#-----------------------------------------------------
		EXECUTABLE="__pathtoexecutable__"
		STARTINGDIRECTORY="__startingdirectory__"
		WORKDIR="__workdir__"
		RESULTSDIR="__resultsdir__"
		UNIQUE_ID_STRING="__unique_id_string__"

		#-----------------------------------------------------
		# Enusre that we are in the correct starting -
		# directory. -
		# -
		#-----------------------------------------------------
		cd $STARTINGDIRECTORY

		#-----------------------------------------------------
		# Make the working scratch space directory. -
		# -
		#-----------------------------------------------------
		if [ ! -e $WORKDIR ]
		then
		mkdir -p $WORKDIR
		fi

		#-----------------------------------------------------
		# Make the results directory. -
		# -
		#-----------------------------------------------------
		if [ ! -e $RESULTSDIR ]
		then
		mkdir -p $RESULTSDIR
		fi

		#-----------------------------------------------------
		# Change directory to the working directory. -
		# -
		#-----------------------------------------------------
		cd $WORKDIR

		#-----------------------------------------------------
		# Run the executable. -
		# -
		#-----------------------------------------------------
		log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode start

		__joblaunchcommand__

		log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode final

		sleep 30
		#-----------------------------------------------------
		# Enusre that we return to the starting directory. -
		# -
		#-----------------------------------------------------
		cd $STARTINGDIRECTORY

		#-----------------------------------------------------
		# Copy the results back to the $RESULTSDIR -
		# -
		#-----------------------------------------------------
		cp -rf $WORKDIR/* $RESULTSDIR && rm -rf $WORKDIR

		#-----------------------------------------------------
		# Move the batch file name to $RESULTSDIR -
		# -
		#-----------------------------------------------------
		mv __batchfilename__ $RESULTSDIR

		#-----------------------------------------------------
		# Check the final results. -
		# -
		#-----------------------------------------------------
		check_executable_driver.py -p $RESULTSDIR -i $UNIQUE_ID_STRING

		#-----------------------------------------------------
		# The script now determines if we are to resubmit -
		# itself. -
		# -
		#-----------------------------------------------------
		case __resubmitme__ in
		0)
		test_harness_driver.py -r;;

		1)
		echo "No resubmit";;
		esac

Profugus/CPU_1node/Scripts/report_profugus.sh

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		#!/bin/bash -l

		echo "This is a Monte Carlo radiation transport miniapp"