Sunny 0.3.0

from jupyter-notebook:latest

from savannah.ornl.gov/gravitas/jupyter-notebook:25.2.1

run apt-get update -y && \

    apt-get upgrade -y && \

user jovyan

#ENV JULIA_CPU_TARGET="generic;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1);x86-64-v4,-rdrnd,base(1)"

ENV JULIA_CPU_TARGET="x86-64-v3"

run julia -e 'using Pkg; Pkg.Registry.update(); \

    Pkg.add([Pkg.PackageSpec(;name="JLLWrappers", version="1.7.0"), \

             Pkg.PackageSpec(;name="Sunny", version="0.7.5"), \

             Pkg.PackageSpec(;name="WGLMakie"), \

             Pkg.PackageSpec(;name="MKL"), \

             Pkg.PackageSpec(;name="WGLMakie"), \

             Pkg.PackageSpec(;name="PackageCompiler"), \

             Pkg.PackageSpec(;url="https://github.com/quantumsteve/Bonito.jl",rev="jupyter_base_url")]); \

     using PackageCompiler, IJulia, Sunny, WGLMakie, MKL; \

     create_sysimage([:IJulia, :Sunny, :WGLMakie, :MKL], sysimage_path="/home/jovyan/sys_flux_plots.so", cpu_target=ENV["JULIA_CPU_TARGET"]); \

     IJulia.installkernel("Julia Sunny WGLMakie", "--sysimage=/home/jovyan/sys_flux_plots.so")'

             Pkg.PackageSpec(;url="https://github.com/quantumsteve/Bonito.jl",rev="jupyter_base_url")])'

ADD precompile ./precompile

run julia -e 'using PackageCompiler; \

    create_sysimage(["IJulia", "Sunny", "WGLMakie", "MKL"], \

                      sysimage_path="/home/jovyan/sys_flux_plots.so", \

                      precompile_execution_file=["precompile/01_LSWT_CoRh2O4.jl", "precompile/02_LLD_CoRh2O4.jl"], \

                      cpu_target=ENV["JULIA_CPU_TARGET"])'

run julia -e 'using IJulia; IJulia.installkernel("Julia Sunny WGLMakie", "--sysimage=/home/jovyan/sys_flux_plots.so")'

# Move the kernelspec out of ${HOME} to the system share location.

# Avoids problems with runtime UID change not taking effect properly

run chmod -R 777 /opt/julia

user root

run rm -rf precompile

COPY examples ./examples

run chmod -R 777 examples