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VERA-dev Issue # - ####

* Add comparison of mixed precisions into IntrType.

* Make the mixed precision as an option through compiler preprocessing

* Add scaling factors for unit testing with mixed precisions.

* Add assertions for mixed precison operators.

* Address Ben and Aaron's comments.

* Fix failing test due to restructuring the operators.

* Remove unused variables.

Graham, Aaron authored Jan 15, 2020 and Stimpson, Shane G committed Jan 15, 2020

* Address code that does not adhere to the code standard

Fixes 3 things:
1. Removes author, data, revision, and dependencies from module headers
2. Removes unneeded indentation inside MODULE statments
3. Removes unneeded indentation inside module CONTAINS statements

* Fix coinuation line indentations

* Fix SELECTTYPE and SELECTCASE indentations

* Fix indentation for PROGRAM and MODULE blocks in unit tests

* Fix continuation lines and SELECT TYPE/CASE in unit tests

HendersonSC authored Jan 13, 2020 and Stimpson, Shane G committed Jan 13, 2020

* Removes unused parameter definitions

* Re-add parameter inside preproc

* Add test for unused_parameters to CI

* Last few unused_parameters

* Rearrange preproc to remove unused variable

The string comparisons done by .APPROXEQ. have been no end of
trouble, whether from major performance degredation or causing
confusion and time-wasting for new developers.  The APPROXEQA,
APPROXEQF, APPROXEQR operators and SOFTEQ function suffice for
all comparisons that have been needed so far.  This commit points
.APPROXEQ. to the same procedures as .APPROXEQA. to prevent
breaking any packages that have used .APPROXEQ.

CASL Ticket - #4484

      because you need variable length arrays, which you can't pass into
      elemental functions

added tests for them.

Adding isNAN and isINF functions to IntrTypes.  Both these routines call the C equivalent in math.h.  Unit test updated

A pre-emptive merge to get several improvements onto master.
Checkpoint files are not fully complete. Work will continue
on a branch. Merge accomplished by squashed commit of following:

commit 1e75a59d820f5ac7e640351620a0c87b2f286b41
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 18:27:09 2014 -0400

    Adding a flush to a unit test avoid an IO race condition.

commit a7079cf37b8e3468e78babeacfa2102016a969d6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 18:21:11 2014 -0400

    Fixing bug with path conversion in HDF5 Filetype.

    Local variables were defined as LEN=LEN(<input>) and need to be
    LEN(<input>+1) because the path conversion adds a "/" at the
    beginning of the path.

commit ffc3e5ea3711392820e999132d1a7e7beb76674a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 16:36:11 2014 -0400

    Missed a USE statement in PointDepletion_CRAM.

commit cca9facf66276f5f2640d0a5cb2b504c428e09f9
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 14:55:11 2014 -0400

    Disabling part of testMPACT_CheckpointFile.

    This is an incomplete feature so disabling part of the test
    in preparation of merging to master.

commit 7d9cf8be2b4c02e680df39c2abd83880ea3e2779
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 14:53:40 2014 -0400

    Removing subpackage global modules.

    These are now no longer needed since the pi-tree
    compiler error is better understood.

commit 3558ef37a07a9ed91e9b3f6f6af454f4a432df01
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Apr 18 14:54:24 2014 -0400

    Fixing bug for setting reflector scattering option

    The value being passed to the Feedback Solver from input was not
    being read from the input parameter list first.

commit 73195d52eaed1dca825fc5fad72c1bef0e465556
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 22:38:34 2014 -0400

    Fixing USE statements in testDetectorEdits

commit 0294006cccfa02acf3252cc20d9bbc799aeaa381
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 13:20:12 2014 -0400

    Fixing bug in ProcBlock_Material.

    Added same parameter twice.

commit 2cc0b3e451c6f391f273b9c9707c61d5141f2b69
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 13:19:19 2014 -0400

    Fixing Intel build errors from USE refactor.

commit e659d36a646c51d779392f16603a57242a896fc9
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 11:39:32 2014 -0400

    Fixing bugs in FuelTemp.f90

    Use of uninitialized value to do allocation and real constants
    were not given explicit type.

commit 185c3e41114ca6c4cfde4fbed927245fa69c6e84
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 11:31:01 2014 -0400

    Disabling PETSc signal handler.

commit 749736abba036b9df0df2f4385044642d6353c72
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 11:12:47 2014 -0400

    Fixing testSnCoupling. IMPLICIT NONE helps.

commit 857390bae666e4e90fb5a32fdf9040243c632a17
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Apr 16 11:01:50 2014 -0400

    Fixing up TPL enabled code for refactored USE statments.

commit aba611d969215b9d9411fed0a9064565868f0d03
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 22:53:08 2014 -0400

    Updating USE statements in Driver package.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 1fb01fc40b7a5cd14a53448908eb2883b1b2349d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 22:52:22 2014 -0400

    Updating USE statements in Lattice subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 96d9e9a1fd6086bfe6d1a5df1af7e0fba4339240
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 22:51:20 2014 -0400

    Fixing up some USE statements missed in previous commits.

commit 8c8480302d006e805df06fb099ebccced8d9fac5
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 16:50:36 2014 -0400

    Updating USE statements in UI subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 2ac943a8b84ba74ec4e42691d36178f752fe3168
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 16:09:45 2014 -0400

    Updating USE statements in Depletion subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 8908793c38e5596b083cf41091706363e7b2a4a9
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 14:57:35 2014 -0400

    Updating USE statements in TH subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit d35b09b05cb4c9521f475b4bc4e4f3e95e45e652
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 14:53:49 2014 -0400

    Updating USE statements in PlanarSynthesis subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 6647c2ff5af0aab761dd054f002ff28c3a23e95d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 14:51:46 2014 -0400

    Updating USE statements in Sn subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit befbc434aa98ec35581dbba118681ff215a4114a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 14:47:46 2014 -0400

    Forgot a use in MOCSweeper_2D3D.

commit 6108c206e2c97649ebd2e2e5216088b5adfb28e4
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 12:19:16 2014 -0400

    Updating USE statements in Transient subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 0fa348d163eb826a9c01e56075c548f5bf7fb8fd
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 12:18:42 2014 -0400

    Updating USE statements in Coupler subpackages.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit d6686d77da3491df86207ebbeef82c74b6f9b1e3
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 12:17:43 2014 -0400

    Updating USE statements in CPM subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit a2057cf8da95428aaf66471a1b037429fc5c6b28
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Apr 15 12:16:59 2014 -0400

    Updating USE statements in Nodal subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 5265192322639d899c4c6e8fa9a45718ea36fe0e
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:10:19 2014 -0400

    Updating USE statements in XS subpackage.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 74b308b82930a2cc7ddeb0b43a62bcbf09ec0222
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:08:47 2014 -0400

    Updating USE statements in CDP.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 9b08ae33cbf4c1c356e85ee545accaf9c2ced807
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:07:30 2014 -0400

    Updating USE statements in CMFD.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 3cc42d0d8d68b7f149b58ccd3e760e305acc7178
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:06:30 2014 -0400

    Updating USE statements in MOC.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 906a09cd457520551468300a2802b90b4169a9fb
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:05:09 2014 -0400

    Removing CoreSolvers.f90 from build.

commit 0724bafd9b27788cad4f22308e01d1db6fd8fec0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:03:18 2014 -0400

    Updating USE statements in CoreSolvers.

    Removing subpackage based module usage to simplify unnecessary
    USE inclusion. This should speed up compilation times. Updated
    source and tests

commit 8cb70be974596790fc2829c5ece9fc2361b7dc61
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 18:01:43 2014 -0400

    Removing unused variables and fixing formatting.

    In BLAS2 and LatticeTypes

commit 913e64cf3677a0dae6c263df09a2978f572d62d1
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Apr 14 11:56:44 2014 -0400

    Fixed up all USE statements in Reactor.

    Still broken. Next is CoreSolvers.

commit 614a73333da4ae84518120dd61d426f596f6e7f3
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Apr 12 19:59:30 2014 -0400

    Fixied USE statements in Reactor and Utils unit tests.

    Still broken.

commit 48935868856af4bab13d023fc70204a7383c3797
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Apr 12 19:03:16 2014 -0400

    Removing Utils and Reactor modules. Broken.

    Only partially updated source. Committing to push to
    linux for continuing work.

commit f9e2d4c6004b114377d3b273e18e5fa9331d4257
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Apr 3 21:11:31 2014 -0400

    Post-merge fix up for build errors.

    Didn't catch smoe local variable definitions.

commit 2cb44343690c2fba275ad05158f63ac0e8f30c1a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 27 16:17:29 2014 -0400

    Fixed some issues when restarting.

    The multi-group accelerator k-eff and eigenvalue solver errors
    were not updated after the checkpoint file was read.

commit f2dee4f1be39cbf43529e9c76221a6f3b13186a4
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 27 14:07:04 2014 -0400

    Minor improvements toward working checkpoint files

    Driver::shield() is no longer executed for restart calculations.
    When the MPACT checkpoint file is being written/read the there
    are now statements printed to the screen. Fixed a bug that prevented
    a restart because the input parameters changed (e.g. "restart T").

commit 77135223925afe12f1fc757edc6e32a061c6e605
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Mar 26 15:33:50 2014 -0400

    Fixing MPACT Checkpoint File unit test to finalize MPI.

commit 82cdc47f9ed2c4d1c6755d8076bc59d6193167f2
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Mar 26 15:22:51 2014 -0400

    Removed debug statement. Attempt to improve test assertions.

commit c2f538ce57af24adcc09fbf1af462b3d1f55d788
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 19:50:20 2014 -0400

    Bug fix for driver and change in XS calculation.

    XS calculation is now primarily done inside the feedback solver. But
    the nu*fission XS is needed to compute the initial guess of the
    solution.

commit 90d91a5c7dda4cdfd5f8e7d8d61aca65e2e880f7
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 19:48:57 2014 -0400

    Post-merge build fix.

    Forgot to remove declaration of a dummy argument that was removed in the
    merged branch.

commit 0707ee5b1b693509e12dd0674a10b0cfff09810d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:47:07 2014 -0400

    Tentatively adding restart capability to Driver.

commit 1863fe44798d571e70d90c1498cc37947dbdb935
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:44:21 2014 -0400

    Updated CMFD to call reinit in setup.

    Also removed some broke code. Fixed test for Intel compiler bug.

commit ad3903e370546d995e04eb485736e3c9ca0a0a25
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:36:54 2014 -0400

    Created method on FeedbackSolver to update macroscopic XS.

    Added a new attribute to Accelerator base type to be
    able to signal to CMFD accelerators to reInit the CMFD LS.

commit afd2fd2bd7191536703db18750b9344ee3845358
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:34:13 2014 -0400

    Cleaning up parts of CoreSolvers.

    Removed whitespace, unused variables, etc.

commit d49dcbc36d861f9d91039783664676b6e37ecb45
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:27:33 2014 -0400

    Cleaning up routine in TransportSweeper.

    CalcMacroChi was being called when it did not need to be in
    calculating the fission source norm.

commit dd046348c58f9a6792df387cfc96b4f8062d4a29
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 25 17:25:32 2014 -0400

    Fixed bug in Depletion.

    Bug was in test when trying to access pointer to log file
    when it was not associated.

commit 284d74673c7c97c699b40c313ab16d923aef2645
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 17:22:04 2014 -0400

    Fixed bug in MPACT_CheckpointFile, updated test.

    Bug was related to unitialized value. Test was updated because
    size of input params changed. (Probably need to find a better
    way to do assertions on the export file before merging).

commit be659e27f7cfcf33160bca03aa6487ac61705ebe
Author: Dan Jabaay <djabaay@umich.edu>
Date:   Mon Mar 24 17:15:07 2014 -0400

    Fixing the Checkpoint file in GNU and adding the restart file inputs to xml.

commit dade0020bcb74a73b607539b42b32db0e208621a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 16:32:00 2014 -0400

    Changed MPACT_Checkpoint file initialization.

    It can now handle user input options.

commit 7ac4238d9efcd21b1aa046491ac5ee06cc56af37
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 16:20:55 2014 -0400

    Adding checkpoint file to FeedbackSolverType.

    Also cleaned up some other comments in FeedbackSolver.

commit 2ef3b303fffe7891721c3696418bc206ea090e1a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 16:20:21 2014 -0400

    Fixing comment in IO_Strings.

commit 334d44d758306fdcbdab876048de67031d587a60
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 15:20:45 2014 -0400

    Added standard inputs for Restart/Checkpoint.

    Added restart card to OPTION block and checkpoint card to EDIT block.
    Updated testProcBlocks. Updated lots of comments in UI.

commit 77a7eff3e46830f6673ac2cb500e552abbfc8f73
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Mar 24 09:54:16 2014 -0400

    Completed comments for FileType_Checkpoint.

commit d9fa3e89ea44a087d75769c3b421e18878b7927e
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sun Mar 23 13:40:13 2014 -0400

    Added comments and improved test for MPACT checkpoint file.

commit 41781a674514fa7335da50a6e18482164bfce0c0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Mar 21 11:02:00 2014 -0400

    Added comments to FileType_DA32.f90

commit b685e9cc41aaa0d24cfa19e70771f7d6afdfca5f
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 14:37:43 2014 -0400

    Updated several unit tests to avoid MPI errors.

    Basically related to clearing variables in the test. MPI_Finalize
    was being called before a lot of other MPI routines which is illegal.

commit 8f345f90562fde9a88f6f22ae9330df2fcb67bd0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 14:31:42 2014 -0400

    Changed behavior of unit test helper in parallel.

    Now the MPI environment does not get initialized unless the
    parallel environment argument is passed in to the init routine.

commit cddb9f505d6566f22b59df66ec18560942e72765
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 14:30:13 2014 -0400

    Fixed a bug in FileType_HDF5 for path truncation.

    Changed local variables path2 to StringType to avoid truncation.

commit db2635c9430aeb55e1cb6e0d5e00c304e780c998
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 14:29:01 2014 -0400

    Added a guard for association of log file in CorrectXS.

commit c12c7f570477fcf596884ba690b2c76227baaf45
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 11:10:58 2014 -0400

    Fixed mpi gather and assignment routines.

    For call to MPI gather forgot to include the root argument. For
    the overloaded assignment operation, the world and CartGrid attributes
    of the ParEnvType needed to duplicate communicators so that if one is
    cleared the other is still valid.

commit 64d0432a8a9695e7c59d7628d0d5d4c378ad1563
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 20 11:09:57 2014 -0400

    Fixed build error with HDF5.

    Changed fullname attribute to string type and HDF5 interfaces expect
    character data type.

commit 73eb38fa2e0c042801932b0e342411b2c0d57741
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Mar 7 19:16:55 2014 -0500

    Fixing GNU build errors and bad merge with master.

commit e9065ff1d14ff62dd3f9ede69726988d5b9c56a2
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Mar 7 15:49:19 2014 -0500

    Saving progress on MPACT_checkpoint file.

    Unit test executes all routines. Import/Export routines for
    checkpoint file should be close to fully implemented. Saving progress
    so I can check GNU compiler and fix all the bugs.

commit b6c0ceacfd55b2a74c113a763a328940793fc669
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Mar 7 15:46:54 2014 -0500

    Added regtype attribute accessor methods to XSMesh

    These are needed for Checkpoint files if the XSMesh region
    type changes (e.g. non-depletable to depletable). This can
    happen when repositioning control rods.

commit ad2eb86aef9bad9508268af088ab3365ba7925eb
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 6 23:15:53 2014 -0500

    Added gather method to MPIEnvType.

    Presently this only does scalar and array INTEGER(SLK) data types.
    Added correct cases to unit test. Unit test needs more. Gather for
    other data types can be implemented as needed.

commit 1d0d87b90101ae1552f1bbfa78b2945ec8a4a938
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 6 22:11:26 2014 -0500

    Updates to ParameterLists & unit test.

    Fixed an error message in ParameterLists.f90. Restructured
    and tried to fix the unit test some. Lots of code is commented out
    so coverage will drop. Since previous test only printed stuff and
    did not do significant assertions, I see the new coverage as being
    more representative.

commit df7daa858350fa12f197730ce67acaecd55cf231
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 6 11:41:12 2014 -0500

    Added method to DA32FileType to get pad to next block.

commit 8e6f0cc1a4f76255acbf4aa66a81b649aa512b4d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 6 11:31:00 2014 -0500

    Added a counter for number of times step is called for Accelerators.

commit 361114564b7f8c0ecafccd2e13af51150a538bc6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Mar 6 10:44:00 2014 -0500

    Adding sweep counters for radial/axial components of PS.

commit a9fe10352ee3aa7cf887ceb27c9050c290d72e85
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 4 16:21:11 2014 -0500

    Added overloaded == operator for Parameter Lists.

    Updated unit test. Partially refactored to use unit test module
    infrastructure and cpp macros. Also renamed plList attribute to pList.
    The extra "l" seeemed redundant.

commit 4e768bdea54c8b087c7a45f7a9af4f4dcdf3029a
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 4 13:45:20 2014 -0500

    Bug fix in write_basic of DA32FileType.

commit 01bc0d6a7d01028191df543343c27007e2b92a11
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Mar 4 13:39:08 2014 -0500

    Providing intial value for angular flux pointer on MOC Sweeper.

commit 95a85c14d0e581e024ea85b873f2551a2ad2a231
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sun Mar 2 13:44:34 2014 -0500

    Modified implementation of DA32 file type to allow for bigger files.

    This *hopefully* only required I change the underlying implementation of
    the read_basic and write_basic routines. These should work now for when
    there are multiple words in a record. At present the default record size
    is 1KB or 256 words. This should allow for 2 TB files.

commit 47d1bb1f0f93848b0eed7abcd66673dd21079187
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Feb 28 13:48:52 2014 -0500

    Added new attributes to modular mesh for total FS and XS regs.

    Also removed unused variables from ModularMesh.f90

commit add8ca0a25791f136cb383b582036e14c872d323
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 27 19:30:04 2014 -0500

    Fixed line endings in FeedbackSolver.f90

commit 1e831eeb0c3b9cb8979f52b661c46820e6814701
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 27 19:26:52 2014 -0500

    Fixing a potential issue with uninitialized return value in DA32 methods.

    The IOSTAT return value could potentially be undefined if the input data
    has no size.

commit 2df2897a902032f02d0947ec51cc36aa59e179b8
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 27 19:24:25 2014 -0500

    Added new method to Fortran file type to set status after initialization.

commit d3c47e01206245f8f1bb1344fb50fdda4de95526
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 15:48:34 2014 -0500

    Fixing what might be a compiler bug with Intel.

    It is for assigning subarrays for 1-D integers.

commit 6bdaf2b6ba28147634280460682ba780f3c646c0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 15:27:33 2014 -0500

    Fixing parameter list iterating/editing in checkpoint file.

commit 7dcf1aafa2b83265e1d268164f5ad9fef2bedc68
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 12:44:37 2014 -0500

    Adding input params to be exported in MPACT checkpoint file.

commit dc0a0aac227eb9dc61dfb6d6936a2fec077aea43
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 12:43:47 2014 -0500

    Adding new method to iterate through parameter list.

    It is not extremely well tested within this commit. Should
    improve test before merging to master.

commit b9b782ebaf4995e2cab7c0d0cb691fb2c9e313fc
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 12:41:29 2014 -0500

    Fixing up a bad deallocation at the end of testCoarseRayTrace.

commit 3f48ce3f7b4b6643b4e202b3b0541bbf907d810d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 10:41:50 2014 -0500

    One more fix for changes to exception handlers.

commit d4f0be6ce18b5932ac2dba653e39dd1faab5c50d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Feb 25 10:40:44 2014 -0500

    Post-merge fix for exception handlers no longer being pointers.

commit bf8f91eb484b2cd38a0c3bdd6105f491c9506e5b
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 21:39:31 2014 -0500

    Saving progress on implementing MPAC_CheckpointFile and unit test.

    Have some progress on the export function. Writes most of the simulation
    meta-data.

commit 8c0d2b4900232f3904f452264ca46d9c08aa95a6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 17:40:38 2014 -0500

    Adding check of parameters for ParallelEnv.

    Unit test currently does not cover several of the MPI_EnvType methods.

commit 3af242cc88b9d6a3d92871493f71d8f41e3e0140
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 17:35:07 2014 -0500

    Changed MPI_Env init routine to duplicate communicators.

commit dd73bf2faac2dc347f0b894efdf1b9342756037b
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 17:11:32 2014 -0500

    Fixed a comment in EigenSolver.f90

commit 0ff05bc8941f7647e955bb60526eccf76fa4bfe6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 17:09:47 2014 -0500

    Refactored testParallelEnv. Added overloaded assignment for PE type.

commit 6f9109daead621737da975abefb299ffef31a528
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 19 15:43:01 2014 -0500

    Minor updates to FileType_Checkpoint.

    Added comment placeholders and removed unnecessary public entities from
    FileType_Checkpoint.

commit b7dfee3e63255e475896e8dc1b529128cf62ff6c
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Feb 15 14:09:23 2014 -0500

    Fixing assertions in testFileType_Checkpoint for Windows.

    In the file path attribute the slash is changed from forward to backward
    in Windows environments.

commit 23782b997c7910f1eb0873adad3f4fc5a2a04a0c
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Feb 15 13:44:36 2014 -0500

    Removing abstract interface from list of public entities. Not needed.

commit f6856b6107b0c4fcb5a50b8e67a8d4c089a239a0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Feb 15 13:43:00 2014 -0500

    Changing an abstract interface to a regular no-op procedure.

    Doing this to avoid an Intel compiler bug.

commit 043a724cc3aaca7c204f36622977cec41e17aae6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Feb 15 13:28:09 2014 -0500

    Forgot to make a routine public.

commit 7cad8e6e3aa3f719c5b6f267f5f07cbd2e59bf2b
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Sat Feb 15 13:26:15 2014 -0500

    Adding in progress work the MPACT_Checkpoint file.

commit b179d0c5c341aaf4c4038b272a98e9084e32c416
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Feb 14 12:17:53 2014 -0500

    Finished unit test for CheckpointFileType.

    Also made some updates to CheckpointFileType to get correct test results.

commit cdc611919550e6814e2dc21726685320fd1aadb7
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Feb 14 12:16:40 2014 -0500

    Fixed memory leak in AssemblyTypes.

    If exception handler was allocated locally in mesh geom it was never deallocated.

commit fdf44fd9876b9b324e09d67ef7d33fa1facfa3b8
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Feb 14 12:15:28 2014 -0500

    Fixing memory leaks in UnitTest_Helper related to CoreMesh.

    Also updated several unit tests.

commit f96bcca3e8fa29077dd7b5b1b03917de1f51bd04
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Feb 14 12:00:15 2014 -0500

    Fixed what looked like a bad refactor in MaterialTypes.f90

    A string value set by an integer was for use by an error statement was just
    not being set in the right place.

commit be52823d4ac44e21f258c0340da29e5cea5251f4
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 13 14:30:56 2014 -0500

    Added over-ridden procedures for Checkpoint file for base file methods

commit db9ca5166149c0ad3d57170df9ed0ba6cfd2eaea
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 13 14:29:53 2014 -0500

    More whitespace fix to FileType_Base.f90

commit b2e8660f615122eaf2e50dcc7b6e780e3c86f6ef
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 13 13:39:28 2014 -0500

    Cleaning up some formatting in FileType_Base.f90

commit 8ac7c4c15d9c758c6f9a7a1c540d95c8250ae0dd
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Feb 13 12:42:05 2014 -0500

    Divided testIOUtil so subtests for filetypes are now their own unit tests.

    New unit tests are testFileType_Base, testFileType_Fortran,
    testFileType_Input, and testFileType_Log. testIOUtil was refactored.

commit 59c142ec81fbff432dff9d8c76974f1e4eef5dfb
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:49:23 2014 -0500

    Replaced fixed length characters from base file type with strings.

    Also updated all the other code. Tests pass in Windows.

commit 33f04f6a04b638f8cfce8e8b0b390e9fb7100bc1
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:27:06 2014 -0500

    Adding skeleton for the MPACT checkpoint file to driver.

commit 275a6c99b914375b159a94900b53e151c506c692
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:23:02 2014 -0500

    Adding skeleton of Checkpoint file base type and unit test.

    Incomplete implementation and test. But some coding started.

commit 931f4bc81a753a8123e6399c141f16007ea7f433
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:15:21 2014 -0500

    Adding FileType_Checkpoint to Utils.f90

commit ab1a130c4a44581ce2c874fb4fe0ea94b6191164
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:12:36 2014 -0500

    Fixed bug in FileType_DA32 NREC for write_char returned with wrong value.

commit bea2f1fa83482cea3ae095a87d3ad5355750b955
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Feb 12 23:09:44 2014 -0500

    Added another interface to getFileParts that works with StringTypes.

commit e9095337d1afbc0a1b35297a75c779c9a32a5413
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Fri Jan 17 10:15:15 2014 -0500

    Finished implementing all of DA32 file type. Still needs comments and unit
    test needs to be completed.

commit 79ce3eb726aa5677dcf9380aad383ae5d1f60402
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Thu Jan 16 13:31:52 2014 -0500

    Implemented reads and writes for 1-D arrays of logicals, 32- and 64-bit
    ints and reals. Not really tested. Just checked a few before all the
    copying and pasting.

commit b002a4bc2d6e19881ad88798496a456c76245d8f
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Jan 15 17:58:39 2014 -0500

    Added new file type for a direct access file with 32 bit records (DA32).
    New type has initial scalar implementations of non-generic routines
    and basic unit test.

commit cd2b83c684dcf4698190053de5634580e8904fac
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Jan 15 17:57:38 2014 -0500

    Forgot to add this file in previous commit.

commit 5642af1acd23d13ab3282c7a52a10c1a977db466
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Wed Jan 15 17:53:10 2014 -0500

    Added static method to Fortran file type to produce a new unused unit
    number. Also made this function available from the module by itself.
    Made the UNIT number passed to the Fortran file type object (and its
    children) optional.

    In making these changes. Encountered an internal compiler error with
    Intel in PinTypes in the edit routines. Modified the edit routine
    slightly to avoid this issue.

    Did not update any tests, but all tests pass.

stupid build failures.

Squashed commit of the following:

commit 458af0c31e02e8d7db9930e747d965141b8c5261
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 18:35:34 2013 -0500

    Needed to add some more USE statements for CoarseMesh and TransportSweeper
    to SnSweeper and PlanarSynthesis_2D3D. Apparently Intel cheats with the
    USE.

commit 45bdc3f00583da639c85bf824113912b079a8ec2
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 18:17:41 2013 -0500

    USE statement fix-ups to avoid internal compiler errors with Intel 12.1.5
    in windows.

commit d7ffcbeec64edb307fc146a53263b369b22a3248
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 17:23:35 2013 -0500

    Removing ability to use IO_Strings and FileType_* through IOutil.

commit ec50cd995993a613d3fdf46191e59108a94fa480
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 17:23:05 2013 -0500

    Missed stray USE statement in a subroutine in testXSLibManager.

commit 2b427b096e9f0e37942e8f7c537c48b696578c5f
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 17:04:26 2013 -0500

    Forgot to update the USE statements in an MOC unit test (and it failed to build on Titan).

commit 972976244928415b7978de453a254040b7a135c0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:31:58 2013 -0500

    Updating USE statements in Driver to use new subpackage based naming system.

commit 6084912d71328767ecd46bad20f67fd75175fde6
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:25:32 2013 -0500

    Updated USE statements in Depletion subpackage to use new subpackage based names.

commit 38e0daf48c22f275b5779a87ab7fac3d7f678851
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:24:43 2013 -0500

    Fixing CMake dependency issue. Now PlanarSynthesis_2D3D is always built,
    but witout Sn present it is just a stub module.

commit e6871d24d8ca6e7f1c61d5cccfb7e25849f5472f
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:02:13 2013 -0500

    Updating USE statements for Lattice subpackage name based modules.

commit 6087e74f657a467b131ab64b971932c7ce78c2b0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:01:15 2013 -0500

    Updating USE statements in Coupler for subpackage name based modules.

commit a089c35ed30addcef70fa5e88ae9b2b63bea7b9d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:00:30 2013 -0500

    Updating USE statements for subpackage name based modules.

commit 821b34081c9f22427ea5828435f34321592e8976
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 16:00:03 2013 -0500

    Adding subpackage module for PlanarSynthesis and updating USE statements to use subpackage names.

commit d0add145ac9d8bf34971df153b0de65f43788791
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:59:38 2013 -0500

    Removing obsolescent file VisPackage.f90

commit 220cc22c390d7135953737a8a549c4819c9d5b4c
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:59:18 2013 -0500

    Adding subpackage module for UI and updating USE statements to use subpackage names.

commit a7f5279ee61a4d3e136a99b5bbc32267e7b1886d
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:58:21 2013 -0500

    Adding subpackage module for Sn and updating USE statements to use subpackage names.

commit 015b3c23a53e5f9faa52fe00c8f84128904d063b
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:57:49 2013 -0500

    Removing obsolescent file MOCSweeper.f90

commit 6c757a3e5c3680e4921eb30ac023f67c51f6aca4
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:56:55 2013 -0500

    Adding subpackage module for CMFD and updating USE statements to use subpackage names.

commit 4cead314fb60650d9e3403ae7c78470a14278578
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:56:30 2013 -0500

    Adding subpackage module for XS and updating USE statements to use subpackage names.

commit 9cd31b905661aae7258fd0a65d1ca74100ea72a0
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:55:58 2013 -0500

    Adding subpackage module for MOC and updating USE statements to use subpackage names.

commit fd903488debdd80e26aa1a277439491657b8bac5
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:54:49 2013 -0500

    Adding subpackage module for CDP and updating USE statements to use subpackage names.

commit f23f565778a8f7efc351f8d2c02d97f0000c89e4
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 15:53:51 2013 -0500

    Adding subpackage module for Nodal and updating USE statements to use subpackage names.

commit b02bea3f5477a33c1980f26ec39c57f1754bcfc8
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 11:14:45 2013 -0500

    Bug fixes for the previous commits.

commit ce412ee7a8727754381c5033e31eeba2e2a647f7
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 10:57:05 2013 -0500

    Adding CoreSolvers module for CoreSolvers subpackage and updated source and
    unit tests to use new subpackage modules from Utils and Reactor.

commit d69d066a72d880056917ca4561ff5f4d63d84474
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 10:34:10 2013 -0500

    Creating Reactor module for Reactor subpackage. Updating all source
    files to use Utils and all unit tests.

commit 793a417670a5f25987fc3398ffa5b1a5456f9a77
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Tue Nov 12 10:06:41 2013 -0500

    Creating Utils module to be used by all unit tests and dependent
    code, rather than using the specific modules inside of Utils.

commit 99c4fef048f4c87e0c5445137911a93c3c4241f3
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Nov 11 18:20:45 2013 -0500

    Adding ModularMesh to CMFD source. Seems to help resolve module dependencies.

commit 2b2b6d1e3c577fb0c6c51b09f2697520d338a4ff
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Nov 11 18:11:30 2013 -0500

    Switching USE IOutil to USE FileType_Log in MOC source.

commit 4c35308efbf73bcb790c3cf4ce62d273b5ad37c8
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Nov 11 17:52:16 2013 -0500

    Fixing USE order in Sn subpackage.

commit 02eda75c3584ceb91d027c9a4cf36870eea78740
Author: Brendan Kochunas <bkochuna@umich.edu>
Date:   Mon Nov 11 17:32:56 2013 -0500

    Fixing up more USE order in CoreSolvers.

unit tests in Utils. Changed order of Utils unit tests in CMakeLists.txt

performed by .APPROXEQ. Updated testSelectedKinds.

Added functions for APPROXLE and APPROXGE for fuzzy logicals when you want to use less than and greater than

order of tests (again) to represent module dependencies within a
subpackage.

Fixed source dependencies error. Moving unit_tests to respective subpackages. Unit test dependencies are not set correctly