refactor tool testing

  stage: test

  script:

    - echo "Running tests for all tools."

    - docker run -v `pwd`:`pwd` --workdir `pwd`/tools/neutrons code.ornl.gov:4567/ndip/galaxy-tools planemo test --galaxy_root /galaxy --docker --no_conda_auto_init --test_output_junit `pwd`/tools/neutrons/junit_output.xml --galaxy_url https://calvera-test.ornl.gov --galaxy_user_key $CALVERA_TEST_API_KEY --galaxy_admin_key $CALVERA_TEST_ADMIN_KEY

    - cd `pwd`/tools/neutrons

    - TEST_FOLDERS=`find . -type f -name "*.xml" -exec grep -l "<test>" {} + | awk -F/ 'BEGIN { OFS="/"; } { $NF=""; sub(/\/$/, ""); print }' | sort -u | sed 's/^\.\///'`

    - echo testing in $TEST_FOLDERS

    - |

      for FOLDER in $TEST_FOLDERS

      do

        docker run -v `pwd`:`pwd` --workdir `pwd`/$FOLDER code.ornl.gov:4567/ndip/galaxy-tools planemo test --galaxy_root /galaxy --docker --no_conda_auto_init --test_output_junit `pwd`/junit_output_${FOLDER}.xml --galaxy_url https://calvera-test.ornl.gov --galaxy_user_key $CALVERA_TEST_API_KEY --galaxy_admin_key $CALVERA_TEST_ADMIN_KEY      

      done

  artifacts:

    when: always

    reports:

      junit: tools/neutrons/junit_output.xml

      junit: tools/neutrons/junit_output*.xml

  tags:

    - rse-multi-builder

  rules: