Update 6 files

<tool id="imaginex_peak_finding" name="Peak Finding" profile="22.05" version="0.1.0">

  <description></description>

    <requirements>

        <container type="docker">code.ornl.gov:4567/dnp-computational-project/data-reduction-ndip-tools/peak-finding/v0.1.0</container>

    </requirements>

    <command detect_errors="exit_code"><![CDATA[

        ##Move files to execution directory

        #for $data in $dataFiles

            #set $dataFile = str($data["dataFile"])

            echo $dataFile >> ./input_filenames.txt &&

        #end for

        touch $output &&

        peak_finding 

            --input-file ./input_filenames.txt

            --scan-average $scan_average

            --file-type $file_type

            --peak-threshold $peak_threshold

            --save-directory /portal &&

        mv /portal/peak_list.npy $output

    ]]></command>

    <inputs>

    	<repeat name="dataFiles" title="Data Files">

	    	<param name="dataFile" type="data" format="txt" label="Data File">

		    </param>

	    </repeat>

        <param name="instrument" type="select" label="Select instrument name:" optional="false">

            <option value="DEMAND" selected="true">DEMAND</option>

        </param>

        <param name="scan_average" type="select" label="Use average images within each scan to remove powder lines?" optional="false">

            <option value="yes" selected="true">yes</option>

            <option value="" selected="false">no</option>

        </param>

        <param name="file_type" type="select" label="File type / extension" optional="false">

            <option value="jpg" selected="true">JPG</option>

        </param>

        <param name="peak_threshold" type="float" label="Peak detection threshold" value="0.0035" />

    </inputs>

    <outputs>

        <data name="output" format="binary" ></data>

    </outputs>

    <help>

        A tool to find peaks in single crystal diffraction.

    </help>

    <tests>

        <test>

            <param name="dataFiles_0|dataFile" value="HB3A_exp770_scan0008_0001.jpg" />

            <param name="dataFiles_1|dataFile" value="HB3A_exp770_scan0008_0002.jpg" />

            <param name="dataFiles_2|dataFile" value="HB3A_exp770_scan0009_0001.jpg" />

            <param name="dataFiles_3|dataFile" value="HB3A_exp770_scan0009_0002.jpg" />

            <param name="scan_average" value="yes"/>

            <param name="file_type" value="jpg"/>

            <param name="peak_threshold" value="0.0035"/>

            <output name="output" file="expected_peak_list.npy"/>

        </test>

    </tests>

</tool>