Loading tools/neutrons/interactivetool_sasview.xml 0 → 100644 +45 −0 Original line number Diff line number Diff line <tool id="interactive_tool_sasview" tool_type="interactive" name="SASView" version="0.1.0" profile="22.05"> <requirements> <container type="docker" shell="/bin/bash">code.ornl.gov:4567/ndip/tool-sources/generic/sas-view:latest</container> </requirements> <entry_points> <entry_point name="SASView" label="sasview" requires_domain="False" requries_path_in_url="True"> <port>8080</port> </entry_point> </entry_points> <environment_variables> <environment_variable name="X_RESOLUTION">$X_RESOLUTION</environment_variable> <environment_variable name="Y_RESOLUTION">$Y_RESOLUTION</environment_variable> <environment_variable name="EP_PATH" inject="entry_point_path_for_label">janatool</environment_variable> </environment_variables> <command><![CDATA[ echo "Notebook produced no output" > $output_single && export GALAXY_WORKING_DIR=`pwd` && mkdir -p /home/sas/inputs && mkdir -p ./outputs && ln -s \${GALAXY_WORKING_DIR}/outputs /home/sas/outputs && #for $i, $s in enumerate($datasets) #set $name = os.path.basename(str($s.input.element_identifier)) ln -sf '${s.input}' '/home/sas/inputs/${name}' && #end for /start.sh \$GALAXY_TOOL_USER ]]> </command> <inputs> <param name="X_RESOLUTION" type="integer" optional="false" value="1920" label="Resolution for X dimension"/> <param name="Y_RESOLUTION" type="integer" optional="false" value="1080" label="Resolution for Y dimension"/> <repeat name="datasets" title="Datasets"> <param name="input" type="data" label="Dataset"/> </repeat> </inputs> <outputs> <collection type="list" name="output" label="SAS View Output Files"> <discover_datasets pattern="__designation__" directory="outputs" /> </collection> <data name="output_single" auto_format="true" label="SAS View Console Output"> </data> </outputs> <help> </help> </tool> Loading
tools/neutrons/interactivetool_sasview.xml 0 → 100644 +45 −0 Original line number Diff line number Diff line <tool id="interactive_tool_sasview" tool_type="interactive" name="SASView" version="0.1.0" profile="22.05"> <requirements> <container type="docker" shell="/bin/bash">code.ornl.gov:4567/ndip/tool-sources/generic/sas-view:latest</container> </requirements> <entry_points> <entry_point name="SASView" label="sasview" requires_domain="False" requries_path_in_url="True"> <port>8080</port> </entry_point> </entry_points> <environment_variables> <environment_variable name="X_RESOLUTION">$X_RESOLUTION</environment_variable> <environment_variable name="Y_RESOLUTION">$Y_RESOLUTION</environment_variable> <environment_variable name="EP_PATH" inject="entry_point_path_for_label">janatool</environment_variable> </environment_variables> <command><![CDATA[ echo "Notebook produced no output" > $output_single && export GALAXY_WORKING_DIR=`pwd` && mkdir -p /home/sas/inputs && mkdir -p ./outputs && ln -s \${GALAXY_WORKING_DIR}/outputs /home/sas/outputs && #for $i, $s in enumerate($datasets) #set $name = os.path.basename(str($s.input.element_identifier)) ln -sf '${s.input}' '/home/sas/inputs/${name}' && #end for /start.sh \$GALAXY_TOOL_USER ]]> </command> <inputs> <param name="X_RESOLUTION" type="integer" optional="false" value="1920" label="Resolution for X dimension"/> <param name="Y_RESOLUTION" type="integer" optional="false" value="1080" label="Resolution for Y dimension"/> <repeat name="datasets" title="Datasets"> <param name="input" type="data" label="Dataset"/> </repeat> </inputs> <outputs> <collection type="list" name="output" label="SAS View Output Files"> <discover_datasets pattern="__designation__" directory="outputs" /> </collection> <data name="output_single" auto_format="true" label="SAS View Console Output"> </data> </outputs> <help> </help> </tool>