Merge branch 'update_jana_to_base_image' into 'dev'

    </environment_variables>

    <command><![CDATA[

        /setup.sh \$GALAXY_TOOL_USER &&

        echo "Notebook produced no output" > $output_single &&

        export GALAXY_WORKING_DIR=`pwd` &&

        mkdir -p /home/jana/inputs &&

        mkdir -p /home/novnc_user/inputs &&

        mkdir -p ./outputs &&

        ln -s \${GALAXY_WORKING_DIR}/outputs /home/jana/outputs &&

        ln -s \${GALAXY_WORKING_DIR}/outputs /home/novnc_user/outputs &&

        #for $i, $s in enumerate($datasets)

            #set $name = os.path.basename(str($s.input.element_identifier))

            ln -sf '${s.input}' '/home/jana/inputs/${name}' &&

            ln -sf '${s.input}' '/home/novnc_user/inputs/${name}' &&

        #end for

        /start.sh \$GALAXY_TOOL_USER

        /start.sh

        ]]>

    </command>

    <inputs>