Commit 1e2a0c64 authored by Ayres, Andrew's avatar Ayres, Andrew
Browse files

Merge branch '112-fix-jana-copy-permissions' into 'dev' 

Update interactivetool_jana2020.xml to fix cp permissions

Closes #112

See merge request ndip/galaxy-tools!188
parents 2bb13a58 2c25178b

tools/neutrons/single_crystal_diffraction/interactivetool_jana2020.xml

+2 −2
Original line number Diff line number Diff line
@@ -14,15 +14,15 @@ 
    </environment_variables>



    <command><![CDATA[

        /setup.sh \$GALAXY_TOOL_USER &&

        echo "Notebook produced no output" > $output_single &&

        export GALAXY_WORKING_DIR=`pwd` &&

        mkdir -p /home/novnc_user/inputs &&

        mkdir -p ./outputs &&

        /setup.sh \$GALAXY_TOOL_USER &&

        ln -s \${GALAXY_WORKING_DIR}/outputs /home/novnc_user/outputs &&

        #for $i, $s in enumerate($datasets)

            #set $name = os.path.basename(str($s.input.element_identifier))

            cp '${s.input}' '/home/novnc_user/inputs/${name}' &&

            su novnc_user -c "cp '${s.input}' '/home/novnc_user/inputs/${name}'" &&

        #end for

        /start.sh \$GALAXY_TOOL_USER

        ]]>