From 706e71a48be0855e46054508b43711ca966859d8 Mon Sep 17 00:00:00 2001
From: Brown <2mx@ornl.gov>
Date: Thu, 11 Nov 2021 10:17:41 -0500
Subject: [PATCH] add headers for pipeline pass
---
sammy/src/io/hdf5IO.cpp | 4 +++-
sammy/src/io/hdf5IO.h | 2 ++
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/sammy/src/io/hdf5IO.cpp b/sammy/src/io/hdf5IO.cpp
index 61ef22f55..8b971c181 100644
--- a/sammy/src/io/hdf5IO.cpp
+++ b/sammy/src/io/hdf5IO.cpp
@@ -25,7 +25,9 @@ namespace sammy {
char sect9[9][MAX_NAME_LEN] = {};
// HDF5 accepts set-size double arrays for datasets: copy over
- double dset_data[data.size()][data[0].size()];
+ const size_t ns = head.numSection;
+ const size_t nc = head.numChan;
+ double dset_data[ns][nc];
for( size_t i=0;i<data.size();++i ){
std::copy(data[i].begin(),data[i].end(), dset_data[i]);
}
diff --git a/sammy/src/io/hdf5IO.h b/sammy/src/io/hdf5IO.h
index 3868b230d..860534d5e 100644
--- a/sammy/src/io/hdf5IO.h
+++ b/sammy/src/io/hdf5IO.h
@@ -4,6 +4,8 @@
#include <vector>
#include <fstream> // ifstream
#include <iostream>
+#include <cstring>
+#include <stdexcept>
#include "odfIO.h"
#include "H5Cpp.h"
--
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