Adding GPU test.

Profugus/GPU_1node/Scripts/check_profugus.sh

+#!/bin/bash -l
+
+echo "Starting $0 in `pwd`..."
+
+REFVAL=1
+OUTFNAME=stdout.txt
+nsuccess=`grep -c "Total execution time" $OUTFNAME`
+
+if [ $nsuccess -eq ${REFVAL} ]
+then
+    echo "PASSED"
+    exit 0
+else
+    echo "FAILED"
+    exit 1
+fi

Profugus/GPU_1node/Scripts/lsf.template.x

+#! /bin/bash -l
+#BSUB -q __batchqueue__
+#BSUB -J __jobname__
+#BSUB -o __resultsdir__/__jobname__.o%J
+#BSUB -e __resultsdir__/__jobname__.e%J
+#BSUB -n __total_processes__
+#BSUB -W __walltime__
+#BSUB -P CSC244
+
+#-----------------------------------------------------
+# Set up the environment for use of the harness.     -
+#                                                    -
+#-----------------------------------------------------
+source __rgtenvironmentalfile__
+module load __nccstestharnessmodule__
+module load gcc
+module load spectrum_mpi
+module list
+
+#-----------------------------------------------------
+# Define some variables.                             -
+#                                                    -
+#-----------------------------------------------------
+EXECUTABLE="__pathtoexecutable__"
+STARTINGDIRECTORY="__startingdirectory__"
+WORKDIR="__workdir__"
+RESULTSDIR="__resultsdir__"
+UNIQUE_ID_STRING="__unique_id_string__"
+INPUTDIR=${STARTINGDIRECTORY}/../Inputs
+
+echo "EXECUTABLE"
+echo ${EXECUTABLE}
+echo "WORKDIR"
+echo ${WORKDIR}
+echo "RESULTSDIR"
+echo ${RESULTSDIR}
+echo "INPUTDIR"
+echo ${INPUTDIR}
+echo "STARTINGDIRECTORY"
+echo ${STARTINGDIRECTORY}
+
+#-----------------------------------------------------
+# Ensure that we are in the correct starting         -
+# directory.                                         -
+#                                                    -
+#-----------------------------------------------------
+cd $STARTINGDIRECTORY
+
+#-----------------------------------------------------
+# Make the working scratch space directory.          -
+#                                                    -
+#-----------------------------------------------------
+if [ ! -e $WORKDIR ]
+then
+    mkdir -p $WORKDIR
+fi
+
+#-----------------------------------------------------
+# Make the results directory.                        -
+#                                                    -
+#-----------------------------------------------------
+if [ ! -e $RESULTSDIR ]
+then
+    mkdir -p $RESULTSDIR
+fi
+
+#-----------------------------------------------------
+#  Change directory to the working directory.        -
+#                                                    -
+#-----------------------------------------------------
+cd $WORKDIR
+
+echo "Changed to working directory"
+pwd
+ls -l
+
+
+#-----------------------------------------------------
+# Link input files into current directory
+#                                                    -
+#-----------------------------------------------------
+echo "Contents of input directory:"
+ls -l ${INPUTDIR}/
+
+ln -s ${INPUTDIR}/c5g7_3d_gpu_1node.xml .
+ln -s ${INPUTDIR}/c5g7_252g.xml .
+
+#-----------------------------------------------------
+# Run the executable.                                -
+#                                                    -
+#-----------------------------------------------------
+log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode start
+
+mpirun --oversubscribe -np 4 ${EXECUTABLE} -i c5g7_3d_gpu_1node.xml | tee stdout.txt
+
+log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode final
+
+sleep 30
+#-----------------------------------------------------
+# Enusre that we return to the starting directory.   -
+#                                                    -
+#-----------------------------------------------------
+cd $STARTINGDIRECTORY
+
+#-----------------------------------------------------
+# Copy the results back to the $RESULTSDIR           -
+#                                                    -
+#-----------------------------------------------------
+cp -rf $WORKDIR/* $RESULTSDIR && rm -rf $WORKDIR
+
+#-----------------------------------------------------
+# Move the batch file name to  $RESULTSDIR           -
+#                                                    -
+#-----------------------------------------------------
+mv __batchfilename__ $RESULTSDIR
+
+#-----------------------------------------------------
+# Check the final results.                           -
+#                                                    -
+#-----------------------------------------------------
+check_executable_driver.py -p $RESULTSDIR -i $UNIQUE_ID_STRING
+
+#-----------------------------------------------------
+# The script now determines if we are to resubmit    -
+# itself.                                            -
+#                                                    -
+#-----------------------------------------------------
+case __resubmitme__ in
+    0) 
+       test_harness_driver.py -r;;
+
+    1) 
+       echo "No resubmit";;
+esac 

Profugus/GPU_1node/Scripts/pbs.template.x

+#! /bin/bash -l
+
+#PBS -e __resultsdir__
+#PBS -o __resultsdir__
+#PBS -N __jobname__
+#PBS -l walltime=__walltime__
+#PBS -l nodes=__nodes__
+#PBS -q __batchqueue__
+#PBS -A __pbsaccountid__
+
+#-----------------------------------------------------
+# Set up the environment for use of the harness.     -
+#                                                    -
+#-----------------------------------------------------
+source __rgtenvironmentalfile__
+module load __nccstestharnessmodule__
+
+#-----------------------------------------------------
+# Define some variables.                             -
+#                                                    -
+#-----------------------------------------------------
+EXECUTABLE="__pathtoexecutable__"
+STARTINGDIRECTORY="__startingdirectory__"
+WORKDIR="__workdir__"
+RESULTSDIR="__resultsdir__"
+UNIQUE_ID_STRING="__unique_id_string__"
+
+#-----------------------------------------------------
+# Enusre that we are in the correct starting         -
+# directory.                                         -
+#                                                    -
+#-----------------------------------------------------
+cd $STARTINGDIRECTORY
+
+#-----------------------------------------------------
+# Make the working scratch space directory.          -
+#                                                    -
+#-----------------------------------------------------
+if [ ! -e $WORKDIR ]
+then
+    mkdir -p $WORKDIR
+fi
+
+#-----------------------------------------------------
+# Make the results directory.                        -
+#                                                    -
+#-----------------------------------------------------
+if [ ! -e $RESULTSDIR ]
+then
+    mkdir -p $RESULTSDIR
+fi
+
+#-----------------------------------------------------
+#  Change directory to the working directory.        -
+#                                                    -
+#-----------------------------------------------------
+cd $WORKDIR
+
+#-----------------------------------------------------
+# Run the executable.                                -
+#                                                    -
+#-----------------------------------------------------
+log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode start
+
+__joblaunchcommand__
+
+log_binary_execution_time.py --scriptsdir $STARTINGDIRECTORY --uniqueid $UNIQUE_ID_STRING --mode final
+
+sleep 30
+#-----------------------------------------------------
+# Enusre that we return to the starting directory.   -
+#                                                    -
+#-----------------------------------------------------
+cd $STARTINGDIRECTORY
+
+#-----------------------------------------------------
+# Copy the results back to the $RESULTSDIR           -
+#                                                    -
+#-----------------------------------------------------
+cp -rf $WORKDIR/* $RESULTSDIR && rm -rf $WORKDIR
+
+#-----------------------------------------------------
+# Move the batch file name to  $RESULTSDIR           -
+#                                                    -
+#-----------------------------------------------------
+mv __batchfilename__ $RESULTSDIR
+
+#-----------------------------------------------------
+# Check the final results.                           -
+#                                                    -
+#-----------------------------------------------------
+check_executable_driver.py -p $RESULTSDIR -i $UNIQUE_ID_STRING
+
+#-----------------------------------------------------
+# The script now determines if we are to resubmit    -
+# itself.                                            -
+#                                                    -
+#-----------------------------------------------------
+case __resubmitme__ in
+    0) 
+       test_harness_driver.py -r;;
+
+    1) 
+       echo "No resubmit";;
+esac 

Profugus/GPU_1node/Scripts/report_profugus.sh

+#!/bin/bash -l
+
+echo "This is a Monte Carlo radiation transport miniapp"

Profugus/GPU_1node/Scripts/rgt_test_input.txt

+jobname = profugus_cpu_1node
+total_processes = 1
+processes_per_node = 32
+batchqueue = batch
+walltime = 60
+executablename = xmc
+batchfilename = run_profugus.sh
+buildscriptname = ./build_profugus.sh
+checkscriptname = ./check_profugus.sh
+reportscriptname = ./report_profugus.sh