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CNMS
CNMS_Computing_Resources
Commits
01beff5a
Commit
01beff5a
authored
Apr 25, 2017
by
Doak, Peter W
Browse files
netlogo 6.0.1 example added
parent
931c9c07
Changes
3
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CADES/NETLOGO/netlogo_6_0_1_job.pbs
0 → 100644
View file @
01beff5a
#!/bin/bash
#PBS -S /bin/bash
#PBS -m be
#PBS -M youremail@ornl.gov
#PBS -N sample_job
#PBS -q batch
#PBS -l nodes=1:ppn=32:hw32
#PBS -l walltime=0:10:00
#PBS -l naccesspolicy=singlejob
#PBS -W group_list=cades-cnms
#PBS -l qos=std
#PBS -A cnms
export
OMP_NUM_THREADS
=
1
cd
$PBS_O_WORKDIR
#this can be useful to see from outside shells
cat
$PBS_NODEFILE
>
pbs_nodefile
module load
env
/cades-cnms
.
$SOFTWARECNMS
/spack/share/spack/setup-env.sh
spack load jdk
module load NetLogo/6.0.1
#each of these () surrounded commands launches in a subshell
(
java
-Xms8g
-Xmx128g
-Dfile
.encoding
=
UTF-8
-Dnetlogo
.extensions.dir
=
$NETLOGOROOT
/app/extensions
-classpath
app/args4j-2.0.12.jar:
$NETLOGOROOT
/app/asm-5.0.3.jar:
$NETLOGOROOT
/app/asm-all-5.0.4.jar:
$NETLOGOROOT
/app/asm-analysis-5.0.3.jar:
$NETLOGOROOT
/app/asm-tree-5.0.3.jar:
$NETLOGOROOT
/app/asm-util-5.0.3.jar:
$NETLOGOROOT
/app/behaviorsearch.jar:
$NETLOGOROOT
/app/commons-codec-1.10.jar:
$NETLOGOROOT
/app/commons-logging-1.1.1.jar:
$NETLOGOROOT
/app/gluegen-rt-2.3.2.jar:
$NETLOGOROOT
/app/httpclient-4.2.jar:
$NETLOGOROOT
/app/httpcore-4.2.jar:
$NETLOGOROOT
/app/httpmime-4.2.jar:
$NETLOGOROOT
/app/jcommon-1.0.16.jar:
$NETLOGOROOT
/app/jfreechart-1.0.13.jar:
$NETLOGOROOT
/app/jhotdraw-6.0b1.jar:
$NETLOGOROOT
/app/jmf-2.1.1e.jar:
$NETLOGOROOT
/app/jogl-all-2.3.2.jar:
$NETLOGOROOT
/app/json-simple-1.1.1.jar:
$NETLOGOROOT
/app/log4j-1.2.16.jar:
$NETLOGOROOT
/app/macro-compat_2.12-1.1.1.jar:
$NETLOGOROOT
/app/netlogo-6.0.1.jar:
$NETLOGOROOT
/app/parboiled-core-1.1.7.jar:
$NETLOGOROOT
/app/parboiled-java-1.1.7.jar:
$NETLOGOROOT
/app/parboiled_2.12-2.1.3.jar:
$NETLOGOROOT
/app/pegdown-1.6.0.jar:
$NETLOGOROOT
/app/picocontainer-2.13.6.jar:
$NETLOGOROOT
/app/rsyntaxtextarea-2.6.0.jar:
$NETLOGOROOT
/app/scala-library-2.12.0.jar:
$NETLOGOROOT
/app/scala-library-2.12.1.jar:
$NETLOGOROOT
/app/scala-parser-combinators_2.12-1.0.5.jar:
$NETLOGOROOT
/app/shapeless_2.12-2.3.2.jar org.nlogo.headless.Main
--model
./predator-prey.nlogo
--experiment
experiment1 2>&1
>
out1
)
&
#wait for all subshells to complete
wait
CADES/NETLOGO/netlogo_job.pbs
View file @
01beff5a
...
...
@@ -8,7 +8,8 @@
#PBS -l walltime=0:10:00
#PBS -l naccesspolicy=singlejob
#PBS -W group_list=cades-cnms
#PBS -l qos=condo
#PBS -l qos=std
#PBS -A cnms
export
OMP_NUM_THREADS
=
1
...
...
CADES/NETLOGO/predator-prey.nlogo
0 → 100644
View file @
01beff5a
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