Bugfixes. Scaling test works, must re-run docking test.

loadem.py

@@ -12,8 +12,7 @@ def get_shard(host):
 
     for i in range(120):
         try:
-            r = redis.StrictRedis(host=host, port=6379, password="Z1908840168_2_T1",
-                                  db=0, single_connection_client=True)
+            r = redis.StrictRedis(host=host, port=6379, password="Z1908840168_2_T1", db=0)
             break
         except redis.exceptions.ConnectionError:
             conn_retries += 1
@@ -25,6 +24,8 @@ def get_shard(host):
     r.connection_pool.disconnect()
     del r
 
+    if shard is None:
+        return shard
     return shard.decode('utf8')
 
 def main(argv):

test_redis.lsf

 #BSUB -nnodes 60
-#BSUB -W 30
+#BSUB -W 10
 #BSUB -q debug
 #BSUB -P BIF128
 #BSUB -J db_load
 #BSUB -o %J.out
-#BSUB -e %J.err
 
 source /ccs/proj/bif128/venvs/env.sh
 PROJ=/gpfs/alpine/bif128/proj-shared/redis
 cpus=$(( LSB_MAX_NUM_PROCESSORS-1 ))
 
+echo "Starting $((cpus/42)) node run at " `date`
+
 # create the database afresh (DON'T DO THIS AFTER ACTUAL DOCKING IS DONE)
 rm -f $PROJ/shards.rdb
-redis-server shards.conf 2>&1 >$PROJ/"redis_"$LSB_JOBID.log &
+redis-server shards.conf 2>&1 >$PROJ/"shard_"$LSB_JOBID.log &
 
-echo "Starting $((cpus/42)) node run at " `date`
 python setdb.py `hostname` /gpfs/alpine/bif128/world-shared/ligand_shards.txt
 for((i=0;i<120;i++)); do
   memb=$(redis-cli --pass Z1908840168_2_T1 scard shards)